public Confidence createConfidenceRandom() { String confidenceType = pickRandom( confidenceTypes ); return new ConfidenceImpl( confidenceType, String.valueOf( boundRandomDouble( 0d, 1d ) ) ); }
public ConfidenceImpl( String type, String value, String text ) { this.type = type; setValue( value ); this.text = text; }
object = new ConfidenceImpl("not-defined", result[0], "free-text"); object = new ConfidenceImpl(result[0], result[1]); } else if (length == 3) { object = new ConfidenceImpl(result[0], result[1], result[2]);
@Override public BinaryInteraction process(BinaryInteraction item) throws Exception { if (item == null){ return null; } Interactor interactorA = item.getInteractorA(); Interactor interactorB = item.getInteractorB(); String firstInteractor = extractInteractorIdentifier(interactorA); String secondInteractor = extractInteractorIdentifier(interactorB); if (firstInteractor == null){ firstInteractor = secondInteractor; } else if (secondInteractor == null){ secondInteractor = firstInteractor; } BinaryPair currentPair = new BinaryPair(firstInteractor, secondInteractor); if (scores.containsKey(currentPair)){ Double score = scores.get(currentPair); Confidence conf = new ConfidenceImpl(miScoreLabel, scoreFormatter.format(score)); item.getConfidenceValues().add(conf); } return item; }
Confidence confidenceValue = new ConfidenceImpl(); confidenceValue.setValue(scoreResult.toString()); confidenceValue.setType(getScoreName());
public psidev.psi.mi.tab.model.Confidence intactToCalimocho(Confidence conf){ if (conf != null && conf.getValue() != null){ psidev.psi.mi.tab.model.Confidence confMitab = new ConfidenceImpl(); String db = UNKNOWN; if (conf.getCvConfidenceType() != null && conf.getCvConfidenceType().getShortLabel() != null){ db= conf.getCvConfidenceType().getShortLabel(); } confMitab.setType(db); confMitab.setValue(conf.getValue()); return confMitab; } return null; } }
psidev.psi.mi.tab.model.Confidence tabConfidence = new ConfidenceImpl(type, value, text); bi.getConfidenceValues().add(tabConfidence);