public static void check( ) { initialise( ); }
protected static BioSource getBioSource( final String taxid, final CellTypeTag cellType, final TissueTag tissue ) { String id = buildID( taxid, cellType, tissue ); return (BioSource) cache.get( id ); }
public static void ckeck( FeatureTag feature ) { if ( feature.hasFeatureDetection() ) { checkCvFeatureIdentification( feature ); } checkCvTypeIdentification( feature ); for ( Iterator iterator = feature.getXrefs().iterator(); iterator.hasNext(); ) { XrefTag xref = (XrefTag) iterator.next(); XrefChecker.check( xref ); } }
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
public static void check( final HostOrganismTag hostOrganism, final BioSourceFactory bioSourceFactory ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static void check( final OrganismTag organism, final BioSourceFactory bioSourceFactory ) { final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static BioSource getBioSource( final HostOrganismTag hostOrganism ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
public static void ckeck( FeatureTag feature ) { if ( feature.hasFeatureDetection() ) { checkCvFeatureIdentification( feature ); } checkCvTypeIdentification( feature ); for ( Iterator iterator = feature.getXrefs().iterator(); iterator.hasNext(); ) { XrefTag xref = (XrefTag) iterator.next(); XrefChecker.check( xref ); } }
public static void check( ) { initialise( ); }
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
public static void check( final HostOrganismTag hostOrganism, final BioSourceFactory bioSourceFactory ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static void check( final OrganismTag organism, final BioSourceFactory bioSourceFactory ) { final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static BioSource getBioSource( final HostOrganismTag hostOrganism ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
protected static BioSource getBioSource( final String taxid, final CellTypeTag cellType, final TissueTag tissue ) { String id = buildID( taxid, cellType, tissue ); return (BioSource) cache.get( id ); }
public static void check( ) { initialise( ); }
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
public static void check( final HostOrganismTag hostOrganism, final BioSourceFactory bioSourceFactory ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static void check( final OrganismTag organism, final BioSourceFactory bioSourceFactory ) { final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
public static BioSource getBioSource( final HostOrganismTag hostOrganism ) { final String taxid = hostOrganism.getTaxId(); final CellTypeTag cellType = hostOrganism.getCellType(); final TissueTag tissue = hostOrganism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
protected static BioSource getBioSource( final String taxid, final CellTypeTag cellType, final TissueTag tissue ) { String id = buildID( taxid, cellType, tissue ); return (BioSource) cache.get( id ); }