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uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2
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How to use uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2 (Showing top 20 results out of 315)

origin: uk.ac.ebi.intact.app/data-conversion

public Element createDNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, DNA_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.util/data-conversion

  public Element createEndCertainStatus( UserSessionDownload session, Element parent ) {

    return createCertainStatus( session, parent, END_STATUS );
  }
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createStartStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, START_STATUS );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createProteinFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, PROTEIN_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createEndStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, END_STATUS );
}
origin: uk.ac.ebi.intact.app/data-conversion

  public Element createEndCertainStatus( UserSessionDownload session, Element parent ) {

    return createCertainStatus( session, parent, END_STATUS );
  }
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createProteinFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, PROTEIN_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createStartStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, START_STATUS );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

  public Element createEndCertainStatus( UserSessionDownload session, Element parent ) {

    return createCertainStatus( session, parent, END_STATUS );
  }
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createRNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, RNA_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createEndStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, END_STATUS );
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createStartCertainStatus( UserSessionDownload session, Element parent ) {
  return createCertainStatus( session, parent, START_STATUS );
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createProteinFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, PROTEIN_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createEndStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, END_STATUS );
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createStartCertainStatus( UserSessionDownload session, Element parent ) {
  return createCertainStatus( session, parent, START_STATUS );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createDNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, DNA_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createStartStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType ) {
  return createStatus( session, parent, fuzzyType, START_STATUS );
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createDNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, DNA_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createRNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, RNA_FEATURE_REF_TAG_NAME );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createRNAFeatureReference( UserSessionDownload session, Element parent, Feature feature ) {
  // TODO test that.
  return createReference( session, parent, feature, RNA_FEATURE_REF_TAG_NAME );
}
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2

Most used classes

  • AnnotatedObject2xmlPSI2
    Process the common behaviour of AnnotatedObject when exporting PSI version 2.
  • BioSource2xmlPSI2
    Process the common behaviour of an IntAct BioSource when exporting PSI version 2.
  • Component2xmlPSI2
    Implements the tranformation of an IntAct Component into PSI XML.
  • Confidence2xmlPSI2
    Implements the tranformation of an IntAct AnnotatedObject's annotation into a confidence in PSI XML
  • CvObject2xmlPSI2
    Process the common behaviour of an IntAct CvObject when exporting PSI version 2.
  • Feature2xmlPSI2,
  • Interaction2xmlPSI2$InferredInteraction,
  • Interaction2xmlPSI2,
  • Protein2xmlPSI2,
  • Range2xmlPSI2,
  • SmallMolecule2xmlPSI2,
  • AnnotatedObject2xmlPSI25,
  • BioSource2xmlPSI25,
  • Component2xmlPSI25,
  • Confidence2xmlPSI25,
  • Experiment2xmlPSI25,
  • Feature2xmlPSI25,
  • Interaction2xmlPSI25$InferredInteraction,
  • Interaction2xmlPSI25
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