/** * To access the confidence. * * @author Julie Bourbeillon (julie.bourbeillon@labri.fr) * @version $Id$ * @since 1.8.0 */ @Mockable public interface ComponentParameterDao extends IntactObjectDao<ComponentParameter>{ List<ComponentParameter> getByComponentAc( String componentAc ); }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: FeatureDao.java 8760 2007-06-20 16:19:50Z baranda $ * @since <pre>08-Jul-2006</pre> */ @Mockable public interface FeatureDao extends AnnotatedObjectDao<Feature> { }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: InstitutionDao.java 9618 2007-08-30 12:47:21Z baranda $ * @since <pre>04-Jul-2006</pre> */ @Mockable public interface InstitutionDao extends AnnotatedObjectDao<Institution> { }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: FeatureDao.java 16391 2011-06-01 08:50:09Z marine.dumousseau@wanadoo.fr $ * @since <pre>08-Jul-2006</pre> */ @Mockable public interface FeatureDao extends AnnotatedObjectDao<Feature> { List<Feature> getByComponentAc( String componentAc ); }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: InstitutionDao.java 13109 2009-05-11 10:30:49Z baranda $ * @since <pre>04-Jul-2006</pre> */ @Mockable public interface InstitutionDao extends AnnotatedObjectDao<Institution> { }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: InstitutionDao.java 13109 2009-05-11 10:30:49Z baranda $ * @since <pre>04-Jul-2006</pre> */ @Mockable public interface InstitutionDao extends AnnotatedObjectDao<Institution> { }
/** * Dao for deleted protein events * * @author Marine Dumousseau (marine@ebi.ac.uk) * @version $Id$ * @since <pre>03/08/11</pre> */ @Mockable public interface DeletedProteinEventDao extends ProteinEventDao<DeletedProteinEvent> { }
/** * Dao for protein update errors * * @author Marine Dumousseau (marine@ebi.ac.uk) * @version $Id$ * @since <pre>09/08/11</pre> */ @Mockable public interface ProteinUpdateErrorDao<T extends DefaultPersistentUpdateError> extends UpdateEventDao<T>, Serializable { public List<T> getUpdateErrorByLabel(long processId, UpdateError label); public List<T> getUpdateErrorByReason(long processId, String reason); }
/** * dao for protein mapping events * * @author Marine Dumousseau (marine@ebi.ac.uk) * @version $Id$ * @since <pre>03/08/11</pre> */ @Mockable public interface UniprotProteinMapperEventDao extends ProteinEventDao<UniprotProteinMapperEvent> { public List<UniprotProteinMapperEvent> getSuccessfulUniprotMappingEvents(long processId); public List<UniprotProteinMapperEvent> getUnSuccessfulUniprotMappingEvents(long processId); }
/** * Dao for deleted component events * * @author Marine Dumousseau (marine@ebi.ac.uk) * @version $Id$ * @since <pre>03/08/11</pre> */ @Mockable public interface DeletedComponentEventDao extends ProteinEventDao<DeletedComponentEvent> { }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: AnnotationDao.java 8760 2007-06-20 16:19:50Z baranda $ * @since <pre>04-Jul-2006</pre> */ @Mockable public interface AnnotationDao extends IntactObjectDao<Annotation> { List<Annotation> getByTextLike( String text ); }
/** * To access the confidence. * * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id$ * @since 2.4.0 */ @Mockable public interface ComponentConfidenceDao extends IntactObjectDao<ComponentConfidence>{ List<ComponentConfidence> getByComponentAc( String componentAc ); }
/** * To access the Parameter of an interaction. * * @author Julie Bourbeillon (julie.bourbeillon@labri.fr) * @version $Id$ * @since 1.9.0 */ @Mockable public interface InteractionParameterDao extends IntactObjectDao<InteractionParameter>{ public List<InteractionParameter> getByInteractionAc( String interactionAc ); }
/** * To access the confidence. * * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id$ * @since 2.4.0 */ @Mockable public interface ComponentConfidenceDao extends IntactObjectDao<ComponentConfidence>{ List<ComponentConfidence> getByComponentAc( String componentAc ); }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: ComponentDao.java 8760 2007-06-20 16:19:50Z baranda $ * @since <pre>07-Jul-2006</pre> */ @Mockable public interface ComponentDao extends AnnotatedObjectDao<Component> { List<Component> getByInteractorAc( String interactorAc ); }
/** * @author Bruno Aranda (baranda@ebi.ac.uk) * @version $Id: RangeDao.java 16391 2011-06-01 08:50:09Z marine.dumousseau@wanadoo.fr $ * @since <pre>07-Jul-2006</pre> */ @Mockable public interface RangeDao extends IntactObjectDao<Range> { List<Range> getByFeatureAc( String featureAc ); }
/** * To access the Parameter of an interaction. * * @author Julie Bourbeillon (julie.bourbeillon@labri.fr) * @version $Id$ * @since 1.9.0 */ @Mockable public interface InteractionParameterDao extends IntactObjectDao<InteractionParameter>{ public List<InteractionParameter> getByInteractionAc( String interactionAc ); }
/** * To access the confidence. * * @author Irina Armean (iarmean@ebi.ac.uk) * @version $Id$ * @since 1.8.0 */ @Mockable public interface ConfidenceDao extends IntactObjectDao<Confidence>{ public List<Confidence> getByInteractionAc( String interactionAc ); }
/** * Dao for dead proteins * * @author Marine Dumousseau (marine@ebi.ac.uk) * @version $Id$ * @since <pre>03/08/11</pre> */ @Mockable public interface DeadProteinEventDao extends ProteinEventDao<DeadProteinEvent> { public List<DeadProteinEvent> getAllDeadProteinEventsHavingDeletedXrefs(long processId); public List<DeadProteinEvent> getAllDeadProteinEventsWithoutDeletedXrefs(long processId); }
/** * To access the confidence. * * @author Irina Armean (iarmean@ebi.ac.uk) * @version $Id$ * @since 1.8.0 */ @Mockable public interface ConfidenceDao extends IntactObjectDao<Confidence>{ public List<Confidence> getByInteractionAc( String interactionAc ); }