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ca.uhn.hl7v2.parser
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How to use ca.uhn.hl7v2.parser

Best Java code snippets using ca.uhn.hl7v2.parser (Showing top 20 results out of 315)

origin: apache/nifi

  final String componentKey = componentEntry.getKey();
  final Type component = componentEntry.getValue();
  final String componentValue = HL7_ESCAPING.unescape(component.encode(), HL7_ENCODING);
  if (!StringUtils.isEmpty(componentValue)) {
    attributes.put(componentKey, componentValue);
final String fieldValue = HL7_ESCAPING.unescape(field.encode(), HL7_ENCODING);
if (!StringUtils.isEmpty(fieldValue)) {
  attributes.put(fieldKey, fieldValue);
origin: apache/nifi

public HapiField(final Type type) {
  this.value = PipeParser.encode(type, EncodingCharacters.defaultInstance());
  final List<HL7Component> componentList = new ArrayList<>();
  if (type instanceof Composite) {
    final Composite composite = (Composite) type;
    for (final Type component : composite.getComponents()) {
      componentList.add(new HapiField(component));
    }
  }
  final ExtraComponents extra = type.getExtraComponents();
  if (extra != null && extra.numComponents() > 0) {
    final String singleFieldValue;
    if (type instanceof Primitive) {
      singleFieldValue = ((Primitive) type).getValue();
    } else {
      singleFieldValue = this.value;
    }
    componentList.add(new SingleValueField(singleFieldValue));
    for (int i = 0; i < extra.numComponents(); i++) {
      componentList.add(new HapiField(extra.getComponent(i)));
    }
  }
  this.components = Collections.unmodifiableList(componentList);
}
origin: apache/nifi

final HapiContext hapiContext = new DefaultHapiContext();
if (!inputVersion.equals("autodetect")) {
  hapiContext.setModelClassFactory(new CanonicalModelClassFactory(inputVersion));
final String hl7Text = new String(buffer, charset);
try {
  final Message message = parser.parse(hl7Text);
  final Map<String, String> attributes = getAttributes(message, useSegmentNames, parseSegmentFields);
  flowFile = session.putAllAttributes(flowFile, attributes);
origin: pentaho/pentaho-kettle

meta.getFields( data.outputRowMeta, getStepname(), null, null, this, repository, metaStore );
data.parser = new GenericParser();
data.parser.setValidationContext( new NoValidation() );
Message message = data.parser.parse( messageString );
List<HL7Value> values = HL7KettleParser.extractValues( message );
origin: openmrs/openmrs-core

/**
 * @see org.openmrs.hl7.HL7Service#parseHL7String(String)
 */
@Override
public Message parseHL7String(String hl7Message) throws HL7Exception {
  // Any pre-parsing for HL7 messages would go here
  // or a module can use AOP to pre-parse the message
  
  // First, try and parse the message
  Message message;
  try {
    message = parser.parse(hl7Message);
  }
  catch (EncodingNotSupportedException e) {
    throw new HL7Exception("HL7 encoding not supported", e);
  }
  catch (HL7Exception e) {
    throw new HL7Exception("Error parsing message", e);
  }
  
  return message;
}

origin: apache/nifi

final HL7Message message;
try {
  final Message hapiMessage = parser.parse(hl7Text);
  message = new HapiMessage(hapiMessage);
} catch (final Exception e) {
origin: pentaho/pentaho-kettle

Parser parser = new GenericParser();
ValidationContext validationContext = new NoValidation();
parser.setValidationContext( validationContext );
Message msg = parser.parse( message );
Structure structure = msg.get( "MSH" );
String messageType = null;
origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test(expected = ApplicationException.class)
public void processMessage_shouldFailOnEmptyConceptAnswers() throws Exception {
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080630094800||ORU^R01|kgWdFt0SVwwClOfJm3pe|P|2.5|1||||||||15^AMRS.ELD.FORMID\r"
      + "PID|||3^^^^~d3811480^^^^||John3^Doe^||\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20080208|||||||V\r"
      + "ORC|RE||||||||20080208000000|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|1|CWE|5497^CD4, BY FACS^99DCT||^^99DCT|||||||||20080208";
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
}

origin: pentaho/pentaho-kettle

Parser parser = new GenericParser();
ValidationContext validationContext = new NoValidation();
parser.setValidationContext( validationContext );
Message msg = parser.parse( message );
Message ack = msg.generateACK();
origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test(expected = ApplicationException.class)
public void processMessage_shouldFailOnEmptyConceptProposals() throws Exception {
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080630094800||ORU^R01|kgWdFt0SVwwClOfJm3pe|P|2.5|1||||||||15^AMRS.ELD.FORMID\r"
      + "PID|||3^^^^~d3811480^^^^||John3^Doe^||\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20080208|||||||V\r"
      + "ORC|RE||||||||20080208000000|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBR|1|||1284^PROBLEM LIST^99DCT\r"
      + "OBX|1|CWE|6042^PROBLEM ADDED^99DCT||PROPOSED^^99DCT|||||||||20080208";
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test(expected = ApplicationException.class)
public void processMessage_shouldFailIfTheProviderNameTypeCodeIsNotSpecifiedAndIsNotAPersonId() throws Exception {
  int patientId = 2;
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r"
      + "PID|||"
      + patientId
      + "^^^^||Hornblower^Horatio^Test||\r"
      + "PV1||O|1^Unknown Location||||Test^Super User (1-8)^^^^^^^&"
      + HL7Constants.PROVIDER_ASSIGNING_AUTH_IDENTIFIER
      + "&^|||||||||||||||||||||||||||||||||||||20080212|||||||V\r"
      + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT";
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test(expected = HL7Exception.class)
public void processNK1_shouldFailIfTheCodingSystemIsNot99REL() throws Exception {
  // process a message with an invalid coding system
  Patient patient = new Patient(3); // the patient that is the focus of
  // this hl7 message
  String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r"
      + "PID|||3^^^^||Beren^John^Bondo||\r"
      + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^ACKFOO||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r"
      + "ORC|RE||||||||20090728165937|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r"
      + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r"
      + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
  ORUR01Handler oruHandler = new ORUR01Handler();
  Message hl7message = parser.parse(hl7String);
  ORU_R01 oru = (ORU_R01) hl7message;
  List<NK1> nk1List = oruHandler.getNK1List(oru);
  for (NK1 nk1 : nk1List)
    oruHandler.processNK1(patient, nk1);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test(expected = HL7Exception.class)
public void processNK1_shouldFailIfTheRelationshipIdentifierIsFormattedImproperly() throws Exception {
  // process a message with an invalid relationship identifier format
  Patient patient = new Patient(3); // the patient that is the focus of
  // this hl7 message
  String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r"
      + "PID|||3^^^^||Beren^John^Bondo||\r"
      + "NK1|1|Jones^Jane^Lee^^RN|3C^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r"
      + "ORC|RE||||||||20090728165937|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r"
      + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r"
      + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
  ORUR01Handler oruHandler = new ORUR01Handler();
  Message hl7message = parser.parse(hl7String);
  ORU_R01 oru = (ORU_R01) hl7message;
  List<NK1> nk1List = oruHandler.getNK1List(oru);
  for (NK1 nk1 : nk1List)
    oruHandler.processNK1(patient, nk1);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test(expected = HL7Exception.class)
public void processNK1_shouldFailIfTheRelationshipTypeIsNotFound() throws Exception {
  // process a message with a non-existent relationship type
  Patient patient = new Patient(3); // the patient that is the focus of
  // this hl7 message
  String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r"
      + "PID|||3^^^^||Beren^John^Bondo||\r"
      + "NK1|1|Jones^Jane^Lee^^RN|3952A^Fifth Cousin Twice Removed^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r"
      + "ORC|RE||||||||20090728165937|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r"
      + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r"
      + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
  ORUR01Handler oruHandler = new ORUR01Handler();
  Message hl7message = parser.parse(hl7String);
  ORU_R01 oru = (ORU_R01) hl7message;
  List<NK1> nk1List = oruHandler.getNK1List(oru);
  for (NK1 nk1 : nk1List)
    oruHandler.processNK1(patient, nk1);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#getForm(MSH)
 */
@Test
public void getForm_shouldPassIfReturnValueIsNullWhenUuidAndIdIsNull() throws Exception {
  String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||\r"
      + "PID|||3^^^^||Beren^John^Bondo||\r"
      + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r"
      + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r"
      + "ORC|RE||||||||20090728165937|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r"
      + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r"
      + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
  
  ORUR01Handler oruHandler = new ORUR01Handler();
  Message hl7message = parser.parse(hl7String);
  ORU_R01 oru = (ORU_R01) hl7message;
  ca.uhn.hl7v2.model.v25.segment.MSH msh = oru.getMSH();
  Form form = oruHandler.getForm(msh);
  Assert.assertNull(form);
}
origin: openmrs/openmrs-core

  /**
   * @see ORUR01Handler#getForm(MSH)
   */
  @Test
  public void getForm_shouldPassIfReturnValueIsNotNullWhenUuidOrIdIsNotNull() throws Exception {
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||16^AMRS.ELD.FORMID\r"
        + "PID|||3^^^^||Beren^John^Bondo||\r"
        + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r"
        + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r"
        + "ORC|RE||||||||20090728165937|1^Super User\r"
        + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
        + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r"
        + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r"
        + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    ca.uhn.hl7v2.model.v25.segment.MSH msh = oru.getMSH();
    Form form = oruHandler.getForm(msh);
    Assert.assertNotNull(form);    
    }
}
origin: openmrs/openmrs-core

/**
 * Should create a concept proposal because of the key string in the message
 * 
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateConceptProposalAndWithObsAlongside() throws Exception {
  
  // remember initial occurrence of proposal's text in the model
  int initialOccurrences = Context.getConceptService().getConceptProposals("ASDFASDFASDF").size();
  
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20081006115934||ORU^R01|a1NZBpKqu54QyrWBEUKf|P|2.5|1||||||||3^AMRS.ELD.FORMID\r"
      + "PID|||7^^^^~asdf^^^^||Joe^ ^Smith||\r"
      + "PV1||O|1^Bishop Muge||||1^asdf asdf (5-9)|||||||||||||||||||||||||||||||||||||20081003|||||||V\r"
      + "ORC|RE||||||||20081006115645|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20081004|||||||||20081003\r"
      + "OBR|3|||1284^PROBLEM LIST^99DCT\r"
      + "OBX|2|CWE|6042^PROBLEM ADDED^99DCT||PROPOSED^ASDFASDFASDF^99DCT|||||||||20081003";
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
  
  //make sure that the proposal was added
  Assert.assertEquals("Processing of the HL7 message did not result in the new proposal being added to the model",
    initialOccurrences + 1, Context.getConceptService().getConceptProposals("ASDFASDFASDF").size());
  
}

origin: openmrs/openmrs-core

/**
 * Should create a concept proposal because of the key string in the message
 * 
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateBasicConceptProposal() throws Exception {
  
  // remember initial occurrence of proposal's text in the model
  int initialOccurrences = Context.getConceptService().getConceptProposals("PELVIC MASS").size();
  
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080924022306||ORU^R01|Z185fTD0YozQ5kvQZD7i|P|2.5|1||||||||3^AMRS.ELD.FORMID\r"
      + "PID|||7^^^^||Joe^S^Mith||\r"
      + "PV1||O|1^Unknown Module 2||||1^Joe (1-1)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r"
      + "ORC|RE||||||||20080219085345|1^Joe\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|18|DT|5096^RETURN VISIT DATE^99DCT||20080506|||||||||20080212\r"
      + "OBR|19|||1284^PROBLEM LIST^99DCT\r"
      + "OBX|1|CWE|6042^PROBLEM ADDED^99DCT||PROPOSED^PELVIC MASS^99DCT|||||||||20080212";
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
  
  //make sure that the proposal was added
  Assert.assertEquals("Processing of the HL7 message did not result in the new proposal being added to the model",
    initialOccurrences + 1, Context.getConceptService().getConceptProposals("PELVIC MASS").size());
  
}
origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test(expected = ApplicationException.class)
public void processMessage_shouldFailIfQuestionDatatypeIsNeitherBooleanNorNumericNorCoded() throws Exception {
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r"
      + "PID|||7^^^^||Collet^Test^Chebaskwony||\r"
      + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r"
      + "ORC|RE||||||||20080226102537|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|19^FAVORITE FOOD, NON-CODED^99DCT||1|||||||||20080206";
  Assert.assertEquals("Text", Context.getConceptService().getConcept(19).getDatatype().getName());
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
}

origin: openmrs/openmrs-core

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test(expected = ApplicationException.class)
public void processMessage_shouldFailIfQuestionDatatypeIsCodedAndABooleanIsNotAValidAnswer() throws Exception {
  GlobalProperty trueConceptGlobalProperty = new GlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_TRUE_CONCEPT, "7",
      "Concept id of the concept defining the TRUE boolean concept");
  GlobalProperty falseConceptGlobalProperty = new GlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_FALSE_CONCEPT, "8",
      "Concept id of the concept defining the TRUE boolean concept");
  Context.getAdministrationService().saveGlobalProperty(trueConceptGlobalProperty);
  Context.getAdministrationService().saveGlobalProperty(falseConceptGlobalProperty);
  String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r"
      + "PID|||7^^^^||Collet^Test^Chebaskwony||\r"
      + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r"
      + "ORC|RE||||||||20080226102537|1^Super User\r"
      + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r"
      + "OBX|2|NM|4^CIVIL STATUS^99DCT||1|||||||||20080206";
  Assert.assertEquals("Coded", Context.getConceptService().getConcept(4).getDatatype().getName());
  Message hl7message = parser.parse(hl7string);
  router.processMessage(hl7message);
}

ca.uhn.hl7v2.parser

Most used classes

  • DefaultModelClassFactory
    Default implementation of ModelClassFactory. See packageList() for configuration instructions.
  • Parser
    Parses HL7 message Strings into HL7 Message objects and encodes HL7 Message objects into HL7 message
  • PipeParser
    An implementation of Parser that supports traditionally encoded (ie delimited with characters like |
  • GenericParser
    A Parser that delegates parsing tasks to an underlying PipeParser and DefaultXMLParser as needed. Me
  • EncodingCharacters
    Represents the set of special characters used to encode traditionally encoded HL7 messages.
  • DefaultXMLParser,
  • ParserConfiguration,
  • CustomModelClassFactory,
  • EncodingNotSupportedException,
  • Escaping,
  • ModelClassFactory,
  • XMLParser,
  • AbstractModelClassFactory,
  • DefaultEscaping$1,
  • DefaultEscaping$EncLookup,
  • DefaultEscaping,
  • EncodingDetector,
  • Escape,
  • FixFieldDataType
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