protected void processSpliceVariants( UniProtEntry uniProtEntry, UniprotProtein protein ) { Map<String,String> seqMap = new HashMap<String,String>(); List<UniprotSpliceVariant> spliceVariants = findSpliceVariants(uniProtEntry, protein.getOrganism(), seqMap); // add the splice variant to the original protein protein.getSpliceVariants().addAll( spliceVariants ); }
UniprotProtein prot = proteins.iterator().next(); if (prot.getOrganism() != null){ String tax = Integer.toString(prot.getOrganism().getTaxid()); if (taxId.equalsIgnoreCase(tax)){ return true;
UniprotFeatureChain chain = new UniprotFeatureChain( id, protein.getOrganism(), chainSequence ); chain.setDescription( description ); chain.setStart( begin );
UniprotFeatureChain chain = new UniprotFeatureChain( id, protein.getOrganism(), chainSequence ); chain.setDescription( description ); chain.setStart( begin );
UniprotFeatureChain chain = new UniprotFeatureChain( id, protein.getOrganism(), chainSequence ); chain.setDescription( description ); chain.setStart( begin );