How to use

initialize

method

in

uk.ac.ebi.intact.core.persister.IntactCore

/**
 * Initializes the AnnotatedObject collections (xrefs, aliases, annotations).
 *
 * @param cv The annotatedObject
 */
public static void initializeCvObject(CvObject cv) {
  initializeAnnotatedObject(cv);
  if (cv instanceof CvDagObject) {
    CvDagObject cvdag = (CvDagObject) cv;
    initialize(cvdag.getParents());
    initialize(cvdag.getChildren());
  }
}

/**
 * Initializes the AnnotatedObject collections (xrefs, aliases, annotations).
 *
 * @param ao The annotatedObject
 */
public static void initializeAnnotatedObject(AnnotatedObject ao) {
  initialize(ao.getXrefs());
  initialize(ao.getAliases());
  initialize(ao.getAnnotations());
}

/**
 * Initializes the AnnotatedObject collections (xrefs, aliases, annotations).
 *
 * @param cv The annotatedObject
 */
public static void initializeCvObject(CvObject cv) {
  initializeAnnotatedObject(cv);
  if (cv instanceof CvDagObject) {
    CvDagObject cvdag = (CvDagObject) cv;
    initialize(cvdag.getParents());
    initialize(cvdag.getChildren());
  }
}

/**
 * Initializes the AnnotatedObject collections (xrefs, aliases, annotations).
 *
 * @param ao The annotatedObject
 */
public static void initializeAnnotatedObject(AnnotatedObject ao) {
  initialize(ao.getXrefs());
  initialize(ao.getAliases());
  initialize(ao.getAnnotations());
}

private <T extends AnnotatedObject> void initializeCommonsIfNecessary(T ao, T managedObject) {
  if (IntactCore.isInitialized(ao.getXrefs()))
    IntactCore.initialize(managedObject.getXrefs());
  if (IntactCore.isInitialized(ao.getAnnotations()))
    IntactCore.initialize(managedObject.getAnnotations());
  if (IntactCore.isInitialized(ao.getAliases())) {
    IntactCore.initialize(managedObject.getAliases());
  }
}

private <T extends AnnotatedObject> void initializeCommonsIfNecessary(T ao, T managedObject) {
  if (IntactCore.isInitialized(ao.getXrefs()))
    IntactCore.initialize(managedObject.getXrefs());
  if (IntactCore.isInitialized(ao.getAnnotations()))
    IntactCore.initialize(managedObject.getAnnotations());
  if (IntactCore.isInitialized(ao.getAliases())) {
    IntactCore.initialize(managedObject.getAliases());
  }
}