Public

<init>

getExperiment

getShortlabel

hasShortlabel

setShortlabel

InteractionPersister$ExperimentWrapper

Finding current android device location

The GridBagLayout class is a flexible layout manager that aligns components
vertically and horizonta

java.awt.GridBagLayout

A specialized Writer that writes to a file in the file system. All write
requests made by calling me

java.io.FileWriter

A Java representation of the SQL TIMESTAMP type. It provides the capability of
representing the SQL 

java.sql.Timestamp

An iterator over a sequence of objects, such as a collection.If a collection has
been changed since 

java.util.Iterator

Basic implementation of javax.sql.DataSource that is configured via JavaBeans
properties. This is no

org.apache.commons.dbcp.BasicDataSource

This is the central class in the log4j package. Most logging operations, except
configuration, are d

org.apache.log4j.Logger

requestLocationUpdates

Return the contained value, if present, otherwise throw an exception to be
created by the provided s

orElseThrow

setContentView

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to use getShortlabelmethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper

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How to use
getShortlabel
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper