Public

<init>

getExperiment

getShortlabel

hasShortlabel

setShortlabel

InteractionPersister$ExperimentWrapper

Making http requests using okhttp

Thrown when a program encounters the end of a file or stream during an input
operation.

java.io.EOFException

Thrown when a hostname can not be resolved.

java.net.UnknownHostException

 KeyStore is responsible for maintaining cryptographic keys and their owners. 
The type of the syste

java.security.KeyStore

A connection represents a link from a Java application to a database. All SQL
statements and results

java.sql.Connection

Provides an abstract class to be subclassed to create an HTTP servlet suitable
for a Web site. A sub

javax.servlet.http.HttpServlet

Defines the contract between a returned instance and the runtime when an
application needs to provid

javax.ws.rs.core.Response

putExtra

compareTo

getContentResolver

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to use getShortlabelmethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper.getShortlabel (Showing top 3 results out of 315)

How to use
getShortlabel
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper