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Extract data from a organism Element and produce an Intact BioSource Human Homo sapiens

process

Gson

Updating database using SQL prepared statement

A thread is a thread of execution in a program. The Java Virtual Machine allows
an application to ha

java.lang.Thread

This exception is thrown when a timeout expired on a socket read or accept
operation.

java.net.SocketTimeoutException

The abstract base class for all number formats. This class provides the
interface for formatting and

java.text.NumberFormat

A Properties object is a Hashtable where the keys and values must be Strings.
Each property can have

java.util.Properties

A map that has its keys ordered. The sorting is according to either the natural
ordering of its keys

java.util.SortedMap

Timers schedule one-shot or recurring TimerTask for execution. Prefer
java.util.concurrent.Scheduled

java.util.Timer

findViewById

getResourceAsStream

setRequestProperty

/**
     * Extract data from an experimentDescription Element and produce an Intact Experiment
     * <p/>
     * <pre>
     *   <experimentDescription id="xray">
     *      <names>
     *         <shortLabel>X-Ray cristallography</shortLabel>
     *      </names>
     * <p/>
     *      <bibref>
     *         <xref>
     *            <primaryRef db="Pubmed" id="1549776"/>
     *         </xref>
     *      </bibref>
     * <p/>
     *      <interactionDetection>
     *         <names>
     *            <shortLabel>X-Ray</shortLabel>
     *         </names>
     * <p/>
     *         <xref>
     *            <primaryRef db="PSI-MI" id="MI:0018"/>
     *         </xref>
     *      </interactionDetection>
     *   </experimentDescription>
     * </pre>
     *
     * @return a map: id --> Experiment to use.
     *
     * @see uk.ac.ebi.intact.model.Experiment
     */

"ERROR - We should be in experimentDescription tag."

// check if the experiment is existing in the global context

"The global definition will be used instead."

"Can't create an Experiment without a name !"

"Can't create an Experiment without a BioSource ! We'll check in the Protein"

// CAUTION - MAY NOT BE THERE - MAY BE A LIST

How to use processmethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.parser.HostOrganismParser

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.parser.HostOrganismParser.process (Showing top 3 results out of 315)

How to use
process
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.parser.HostOrganismParser