How to use

uk.ac.ebi.intact.application.dataConversion.psiUpload.model.ConfidenceTag

constructor

  /**
   * Process a &lt;cellType&gt; in an organism. <br> In order to map it to the IntAct data, we look for the psi-mi
   * <code>primaryRef</code>, and look-up in intact using its <code>id</code>.
   *
   * @param element &lt;cellType&gt;.
   *
   * @return a <code>CellTypeTag</code> if the XML contains a walid psi-mi descriptor.
   *
   * @see uk.ac.ebi.intact.application.dataConversion.psiUpload.model.CellTypeTag
   */
  public static ConfidenceTag process( final Element element ) {

    if ( false == "confidence".equals( element.getNodeName() ) ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, "ERROR - We should be in confidence tag." ) );
    }

    String unit = element.getAttribute( "unit" );
    String value = element.getAttribute( "value" );

    ConfidenceTag confidenceTag = null;
    try {
      confidenceTag = new ConfidenceTag( unit, value );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, e.getMessage() ) );
    }

    return confidenceTag;
  }
}

  /**
   * Process a &lt;cellType&gt; in an organism. <br> In order to map it to the IntAct data, we look for the psi-mi
   * <code>primaryRef</code>, and look-up in intact using its <code>id</code>.
   *
   * @param element &lt;cellType&gt;.
   *
   * @return a <code>CellTypeTag</code> if the XML contains a walid psi-mi descriptor.
   *
   * @see uk.ac.ebi.intact.application.dataConversion.psiUpload.model.CellTypeTag
   */
  public static ConfidenceTag process( final Element element ) {

    if ( false == "confidence".equals( element.getNodeName() ) ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, "ERROR - We should be in confidence tag." ) );
    }

    String unit = element.getAttribute( "unit" );
    String value = element.getAttribute( "value" );

    ConfidenceTag confidenceTag = null;
    try {
      confidenceTag = new ConfidenceTag( unit, value );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, e.getMessage() ) );
    }

    return confidenceTag;
  }
}

  /**
   * Process a &lt;cellType&gt; in an organism. <br> In order to map it to the IntAct data, we look for the psi-mi
   * <code>primaryRef</code>, and look-up in intact using its <code>id</code>.
   *
   * @param element &lt;cellType&gt;.
   *
   * @return a <code>CellTypeTag</code> if the XML contains a walid psi-mi descriptor.
   *
   * @see uk.ac.ebi.intact.application.dataConversion.psiUpload.model.CellTypeTag
   */
  public static ConfidenceTag process( final Element element ) {

    if ( false == "confidence".equals( element.getNodeName() ) ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, "ERROR - We should be in confidence tag." ) );
    }

    String unit = element.getAttribute( "unit" );
    String value = element.getAttribute( "value" );

    ConfidenceTag confidenceTag = null;
    try {
      confidenceTag = new ConfidenceTag( unit, value );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( element, e.getMessage() ) );
    }

    return confidenceTag;
  }
}

if ( confidenceElement != null ) {
  confidence = new ConfidenceTag( confidenceElement.getAttribute( "unit" ),
                  confidenceElement.getAttribute( "value" ) );

if ( confidenceElement != null ) {
  confidence = new ConfidenceTag( confidenceElement.getAttribute( "unit" ),
                  confidenceElement.getAttribute( "value" ) );

if ( confidenceElement != null ) {
  confidence = new ConfidenceTag( confidenceElement.getAttribute( "unit" ),
                  confidenceElement.getAttribute( "value" ) );