How to use
buildID
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ProteinInteractorChecker

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ProteinInteractorChecker.buildID (Showing top 6 results out of 315)

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private void myMethod () {
 ScheduledThreadPoolExecutor s =new ScheduledThreadPoolExecutor(corePoolSize)
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}

  /**
   * Search a protein in the cache
   *
   * @param id
   * @param bioSource
   *
   * @return
   */
  public static ProteinHolder getProtein( String id, String db, BioSource bioSource ) {

    String taxid = null;
    if ( null != bioSource ) {
      taxid = bioSource.getTaxId();
    }

//        System.out.println( "Search cache using: " + buildID( id, db, taxid ) );

    return (ProteinHolder) cache.get( buildID( id, db, taxid ) );
  }

  /**
   * Search a protein in the cache
   *
   * @param id
   * @param bioSource
   *
   * @return
   */
  public static ProteinHolder getProtein( String id, String db, BioSource bioSource ) {

    String taxid = null;
    if ( null != bioSource ) {
      taxid = bioSource.getTaxId();
    }

//        System.out.println( "Search cache using: " + buildID( id, db, taxid ) );

    return (ProteinHolder) cache.get( buildID( id, db, taxid ) );
  }

  /**
   * Search a protein in the cache
   *
   * @param id
   * @param bioSource
   *
   * @return
   */
  public static ProteinHolder getProtein( String id, String db, BioSource bioSource ) {

    String taxid = null;
    if ( null != bioSource ) {
      taxid = bioSource.getTaxId();
    }

//        System.out.println( "Search cache using: " + buildID( id, db, taxid ) );

    return (ProteinHolder) cache.get( buildID( id, db, taxid ) );
  }

String db = proteinInteractor.getPrimaryXref().getDb();
final String cacheId = buildID( proteinId, db, taxId );

String db = proteinInteractor.getPrimaryXref().getDb();
final String cacheId = buildID( proteinId, db, taxId );

String db = proteinInteractor.getPrimaryXref().getDb();
final String cacheId = buildID( proteinId, db, taxId );

Javadoc

Build an identifier for the cache

Popular methods of ProteinInteractorChecker

check
checkCvInteractorType
createXref
filterByTaxid
Remove from a collection of Protein all those that are not related to the given taxid.
getIntactProtein
Get Protein from IntAct from its ID. If this is ID refers to (1) a protein, we send back a Protein o
getOrCreateNonUniprotProtein
In case of Non uniprot protein, we check if it already exist in IntAct (based on biosource, primaryi
getProtein
Search a protein in the cache
hasMultipleBioSource
Check if the set of proteins is related to more than one biosource.
isSpliceVariant
Answer the question: is that protein a Splice Variant ? One (quick) way is to check if the shortlabe

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How to use buildIDmethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ProteinInteractorChecker

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ProteinInteractorChecker.buildID (Showing top 6 results out of 315)

How to use
buildID
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ProteinInteractorChecker