Public

Generated an interactor out of an IntAct Experiment.

create

createAttributeList

Generates an interactorRef out of an IntAct interactor.

createInteractorReference

createNames

Generate the xref tag of the given interactor. That content is attached to the
given parent Element.

createXrefs

getInstance

get the value what will be used as ID of the protein.

getInteractorId

List

Making http requests using okhttp

A BufferedInputStream adds functionality to another input stream-namely, the
ability to buffer the i

java.io.BufferedInputStream

An input stream that reads bytes from a file.    
File file = ...finally  
if (in != null)  
in.clos

java.io.FileInputStream

An output stream that writes bytes to a file. If the output file exists, it can
be replaced or appen

java.io.FileOutputStream

This class consists exclusively of static methods that operate on or return
collections. It contains

java.util.Collections

A Properties object is a Hashtable where the keys and values must be Strings.
Each property can have

java.util.Properties

Defines methods that all servlets must implement. A servlet is a small Java
program that runs within

javax.servlet.Servlet

compareTo

Return the contained value, if present, otherwise throw an exception to be
created by the provided s

orElseThrow

findViewById

/**
     * Generated an interactor out of an IntAct Experiment.
     *
     * @param session
     * @param parent     the Element to which we will add the interactor.
     * @param interactor the IntAct interactor that we convert to PSI.
     *
     * @return the generated interactor Element.
     */

/*
             @is_a@interactor type ; MI:0313 ; synonym:participant type
              @is_a@complex ; MI:0314
               @is_a@protein complex ; MI:0315
               @is_a@protein dna complex ; MI:0233
               @is_a@ribonucleoprot compl\: ribonucleoprotein complex ; MI:0316 ; synonym:protein rna complex
              @is_a@interaction ; MI:0317
              @is_a@nucleic acid ; MI:0318
               @is_a@dna\: deoxyribonucleic acid ; MI:0319 ; synonym:\<new synonym> ; synonym:DNA ; synonym:deoxyribonucleic acid
               @is_a@rna\: ribonucleic acid ; MI:0320 ; synonym:RNA
                @is_a@crna\: catalytic rna ; MI:0321 ; synonym:catalytic RNA ; synonym:catalytic ribonucleic acid
                @is_a@grna\: guide rna ; MI:0322 ; synonym:guide RNA
                @is_a@hnrna\: heterogeneous nuclear ribonucleic acid ; MI:0323 ; synonym:heterogeneous nuclear RNA ; synonym:heterogeneous nuclear ribonucleic acid
                @is_a@mrna\: messenger ribonucleic acid ; MI:0324 ; synonym:mRNA
                @is_a@trna\: transfer ribonucleic acid ; MI:0325 ; synonym:tRNA ; synonym:transfer RNA ; synonym:transfer ribonucleic acid
              @is_a@protein ; MI:0326
               @is_a@peptide ; MI:0327 ; synonym:oligopeptide ; synonym:polypeptide
              @is_a@small molecule ; MI:0328
              @is_a@unknown participant ; MI:0329
        */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <interactorList> or a <proteinParticipant> to build a "

// names xref interactorType organism sequence attributeList

"You must give a non null Protein to build an "

//        Element interactorTypeElement = session.createElement( "interactorType" );

//        Element namesElement = session.createElement( "names" );

//        interactorTypeElement.appendChild( namesElement );

//        Element shortlabelElement = session.createElement( "shortLabel" );

//        namesElement.appendChild( shortlabelElement );

//        Text shortlabelTextElement = session.createTextNode( "protein" );

//        shortlabelElement.appendChild( shortlabelTextElement );

//        Element xrefElement = session.createElement( "xref" );

//        interactorTypeElement.appendChild( xrefElement );

//        Element primaryRefElement = session.createElement( "primaryRef" );

//        primaryRefElement.setAttribute( "db", "psi-mi" );

//        primaryRefElement.setAttribute( "dbAc", "MI:0488" );

//        primaryRefElement.setAttribute( "id", "MI:0326" );

//        xrefElement.appendChild( primaryRefElement );

// organism can be null for small molecules

// 7. Generating sequence... (for Polymers only, ie. Protein and NucleicAcid)

// Do not create a sequence element if no sequence available

// 9. Attaching the newly created element to the parent...

How to use createNamesmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25

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How to use
createNames
method
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uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25