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CvObject2xmlPSI2.hasPsiXref
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How to use
hasPsiXref
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.CvObject2xmlPSI2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.CvObject2xmlPSI2.hasPsiXref (Showing top 4 results out of 315)

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}
origin: uk.ac.ebi.intact.util/data-conversion

if ( hasPsiXref( cvObject, CvComponentRole.BAIT_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.PREY_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.NEUTRAL_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.SELF_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_TARGET_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else if ( hasPsiXref( cvObject, CvComponentRole.UNSPECIFIED_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else {
origin: uk.ac.ebi.intact.app/data-conversion

if ( hasPsiXref( cvObject, CvComponentRole.BAIT_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.PREY_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.NEUTRAL_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.SELF_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_TARGET_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else if ( hasPsiXref( cvObject, CvComponentRole.UNSPECIFIED_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getNeutral();
} else {
origin: uk.ac.ebi.intact.util/data-conversion

if ( hasPsiXref( cvObject, CvComponentRole.BAIT_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.PREY_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.NEUTRAL_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.SELF_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_TARGET_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.UNSPECIFIED_PSI_REF ) ) {
  newCvObject = cvObject;
} else {
origin: uk.ac.ebi.intact.app/data-conversion

if ( hasPsiXref( cvObject, CvComponentRole.BAIT_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.PREY_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.NEUTRAL_PSI_REF ) ) {
  newCvObject = IntactContext.getCurrentInstance().getCvContext().getUnspecified();
} else if ( hasPsiXref( cvObject, CvComponentRole.SELF_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.ENZYME_TARGET_PSI_REF ) ) {
  newCvObject = cvObject;
} else if ( hasPsiXref( cvObject, CvComponentRole.UNSPECIFIED_PSI_REF ) ) {
  newCvObject = cvObject;
} else {
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2CvObject2xmlPSI2hasPsiXref

Popular methods of CvObject2xmlPSI2

  • createCertainStatus
  • createCvObjectXrefs
    Create PSI Xrefs from an IntAct cvObject. Put Xref(psi-mi, identity) as primaryRef, any other as se
  • createEndCertainStatus
  • createEndStatus
  • createNames
  • createStartCertainStatus
  • createStartStatus
  • createStatus
  • getInstance
  • getXmlFromCache
    Checks if the given CvObject has already been generated as XML content. If so, that content is clon
  • updateCache
    Store in the cache the XML representation related to the given CvObject instance.
  • createBiologicalRole
  • updateCache,
  • createBiologicalRole,
  • createExperimentalRole

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