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CvObject2xmlPSI2.createCvObjectXrefs
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How to use
createCvObjectXrefs
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.CvObject2xmlPSI2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.CvObject2xmlPSI2.createCvObjectXrefs (Showing top 10 results out of 315)

origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

private Element createStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType, String tagName ) {
  Element element = session.createElement( tagName );
  // 1. Generating names...
  createNames( session, element, fuzzyType );
  // 2. generating xref...
  Element xrefElement = session.createElement( "xref" );
  createCvObjectXrefs( session, xrefElement, fuzzyType );
  if ( xrefElement.hasChildNodes() ) {
    element.appendChild( xrefElement );
  }
  parent.appendChild( element );
  return element;
}
origin: uk.ac.ebi.intact.app/data-conversion

private Element createStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType, String tagName ) {
  Element element = session.createElement( tagName );
  // 1. Generating names...
  createNames( session, element, fuzzyType );
  // 2. generating xref...
  Element xrefElement = session.createElement( "xref" );
  createCvObjectXrefs( session, xrefElement, fuzzyType );
  if ( xrefElement.hasChildNodes() ) {
    element.appendChild( xrefElement );
  }
  parent.appendChild( element );
  return element;
}
origin: uk.ac.ebi.intact.util/data-conversion

private Element createStatus( UserSessionDownload session, Element parent, CvFuzzyType fuzzyType, String tagName ) {
  Element element = session.createElement( tagName );
  // 1. Generating names...
  createNames( session, element, fuzzyType );
  // 2. generating xref...
  Element xrefElement = session.createElement( "xref" );
  createCvObjectXrefs( session, xrefElement, fuzzyType );
  if ( xrefElement.hasChildNodes() ) {
    element.appendChild( xrefElement );
  }
  parent.appendChild( element );
  return element;
}
origin: uk.ac.ebi.intact.app/data-conversion

createCvObjectXrefs( session, xrefElement, cvObject );
origin: uk.ac.ebi.intact.util/data-conversion

createCvObjectXrefs( session, xrefElement, cvObject );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

createCvObjectXrefs( session, xrefElement, cvObject );
origin: uk.ac.ebi.intact.util/data-conversion

createCvObjectXrefs( session, xrefElement, newCvObject );
element.appendChild( xrefElement );
origin: uk.ac.ebi.intact.app/data-conversion

createCvObjectXrefs( session, xrefElement, newCvObject );
element.appendChild( xrefElement );
origin: uk.ac.ebi.intact.util/data-conversion

createCvObjectXrefs( session, xrefElement, newCvObject );
element.appendChild( xrefElement );
origin: uk.ac.ebi.intact.app/data-conversion

createCvObjectXrefs( session, xrefElement, newCvObject );
element.appendChild( xrefElement );
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2CvObject2xmlPSI2createCvObjectXrefs

Javadoc

Create PSI Xrefs from an IntAct cvObject.
Put Xref(psi-mi, identity) as primaryRef, any other as secondaryRef.
If not psi-mi available, take randomly an other one.

Popular methods of CvObject2xmlPSI2

  • createCertainStatus
  • createEndCertainStatus
  • createEndStatus
  • createNames
  • createStartCertainStatus
  • createStartStatus
  • createStatus
  • getInstance
  • getXmlFromCache
    Checks if the given CvObject has already been generated as XML content. If so, that content is clon
  • updateCache
    Store in the cache the XML representation related to the given CvObject instance.
  • createBiologicalRole
  • createExperimentalRole
  • createBiologicalRole,
  • createExperimentalRole,
  • hasPsiXref

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