Public

Create the experimentalForm corresponding to the participant we are being given
the participantId.

createExperimentalForm

Generate the XML content of a proteinParticipant as well as the experimentalForm
based on the given 

createProteinExperimentalForm

Generate the XMl content of a proteinParticipant as well as the experimentalForm
based on the given 

createProteinParticipant

Generate the XMl content of a SmallMolecule based on the given component.

createSmallMoleculeParticipant

getInstance

get the value what will be used as ID of the experiment.

getParticipantId

Check that the given feature type is a tag.

isTaggedFeature

Point

Start an intent from android

java.awt.Menu

Represents a command that can be executed. Often used to run code in a different
Thread.

java.lang.Runnable

A ConnectException is thrown if a connection cannot be established to a remote
host on a specific po

java.net.ConnectException

This exception is thrown when a timeout expired on a socket read or accept
operation.

java.net.SocketTimeoutException

A buffer for bytes. A byte buffer can be created in either one of the following
ways:

 *  #allocate

java.nio.ByteBuffer

ArrayList is an implementation of List, backed by an array. All optional
operations including adding

java.util.ArrayList

runOnUiThread

Return the contained value, if present, otherwise throw an exception to be
created by the provided s

orElseThrow

setScale

/**
     * Generated an interaction out of an IntAct Interaction.
     *
     * @param session
     * @param parent      the Element to which we will add the proteinInteractor.
     * @param interaction the IntAct Interaction that we convert to PSI.
     *
     * @return the generated interaction Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <interactionList> to build a "

"You must give a non null Interaction to build an "

// we start participant id from scratch again

//        session.resetParticipantIdentifier();

//       availabilityRef [or] availability

// only generate it if the definition doesn't exist.

// add the experiment definition to the global list of experiments

// add an experimentRef to the local list.

//    this is actually done at the same time that participantList

// 9. Generating inferredInteractionList...

// todo check that we are not generating it twice !!

// check that we are not generating several times the same features

// we already have generated that inferred interaction, skip it.

// that feature binds to an other one ... generate an Inferred interaction.

// CvInteractionType is optional in the intact model.

// if interaction or experiment is negative (Annotation), true, otherwise false.

How to use createExperimentalFormmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Component2xmlPSI2

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How to use
createExperimentalForm
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Component2xmlPSI2