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UserSessionDownload.getPsiDocument
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How to use
getPsiDocument
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload.getPsiDocument (Showing top 20 results out of 315)

origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * Return the root element of the PSI document.
 *
 * @return the source Element.
 */
public Element getRootElement() {
  if ( rootElement == null ) {
    rootElement = getPsiDocument().getDocumentElement();
  }
  return rootElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the root element of the PSI document.
 *
 * @return the source Element.
 */
public Element getRootElement() {
  if ( rootElement == null ) {
    rootElement = getPsiDocument().getDocumentElement();
  }
  return rootElement;
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * Return the root element of the PSI document.
 *
 * @return the source Element.
 */
public Element getRootElement() {
  if ( rootElement == null ) {
    rootElement = getPsiDocument().getDocumentElement();
  }
  return rootElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

  public Text createTextNode( String text ) {
    return getPsiDocument().createTextNode( text );
  }
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

  public Text createTextNode( String text ) {
    return getPsiDocument().createTextNode( text );
  }
}
origin: uk.ac.ebi.intact.util/data-conversion

  public Text createTextNode( String text ) {
    return getPsiDocument().createTextNode( text );
  }
}
origin: uk.ac.ebi.intact.util/data-conversion

public Element createElement( String name ) {
  return getPsiDocument().createElement( name );
}
origin: uk.ac.ebi.intact.app/data-conversion

public Element createElement( String name ) {
  return getPsiDocument().createElement( name );
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Element createElement( String name ) {
  return getPsiDocument().createElement( name );
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * Return the availabilityList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getAvailabilityListElement() {
  if ( availabilityListElement == null ) {
    Document document = getPsiDocument();
    availabilityListElement = document.createElement( "availabilityList" );
    Element entry = getEntryElement();
    entry.appendChild( availabilityListElement );
  }
  return availabilityListElement;
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * Return the source element under the entry of the PSI document. If the element doesn't exist, it is created.
 *
 * @return the source Element.
 */
public Element getSourceElement() {
  if ( sourceElement == null ) {
    Document document = getPsiDocument();
    sourceElement = document.createElement( "source" );
    Element entry = getEntryElement();
    entry.appendChild( sourceElement );
  }
  return sourceElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the source element under the entry of the PSI document. If the element doesn't exist, it is created.
 *
 * @return the source Element.
 */
public Element getSourceElement() {
  if ( sourceElement == null ) {
    Document document = getPsiDocument();
    sourceElement = document.createElement( "source" );
    Element entry = getEntryElement();
    entry.appendChild( sourceElement );
  }
  return sourceElement;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * Return the source element under the entry of the PSI document. If the element doesn't exist, it is created.
 *
 * @return the source Element.
 */
public Element getSourceElement() {
  if ( sourceElement == null ) {
    Document document = getPsiDocument();
    sourceElement = document.createElement( "source" );
    Element entry = getEntryElement();
    entry.appendChild( sourceElement );
  }
  return sourceElement;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * Return the interactionList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getInteractionListElement() {
  if ( interactionListElement == null ) {
    Document document = getPsiDocument();
    interactionListElement = document.createElement( "interactionList" );
    Element entry = getEntryElement();
    entry.appendChild( interactionListElement );
  }
  return interactionListElement;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * Return the availabilityList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getAvailabilityListElement() {
  if ( availabilityListElement == null ) {
    Document document = getPsiDocument();
    availabilityListElement = document.createElement( "availabilityList" );
    Element entry = getEntryElement();
    entry.appendChild( availabilityListElement );
  }
  return availabilityListElement;
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * Return the interactionList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getInteractionListElement() {
  if ( interactionListElement == null ) {
    Document document = getPsiDocument();
    interactionListElement = document.createElement( "interactionList" );
    Element entry = getEntryElement();
    entry.appendChild( interactionListElement );
  }
  return interactionListElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the interactionList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getInteractionListElement() {
  if ( interactionListElement == null ) {
    Document document = getPsiDocument();
    interactionListElement = document.createElement( "interactionList" );
    Element entry = getEntryElement();
    entry.appendChild( interactionListElement );
  }
  return interactionListElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the availabilityList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getAvailabilityListElement() {
  if ( availabilityListElement == null ) {
    Document document = getPsiDocument();
    availabilityListElement = document.createElement( "availabilityList" );
    Element entry = getEntryElement();
    entry.appendChild( availabilityListElement );
  }
  return availabilityListElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the interactorList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getInteractorListElement() {
  if ( interactorListElement == null ) {
    Document document = getPsiDocument();
    interactorListElement = document.createElement( "interactorList" );
    Element entry = getEntryElement();
    if ( interactionListElement != null ) {
      entry.insertBefore( interactorListElement, interactionListElement );
    } else {
      entry.appendChild( interactorListElement );
    }
  }
  return interactorListElement;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * Return the experimentList element under the entry of the PSI document. If the element doesn't exist, it is
 * created.
 *
 * @return the source Element.
 */
public Element getExperimentListElement() {
  if ( experimentListElement == null ) {
    Document document = getPsiDocument();
    experimentListElement = document.createElement( "experimentList" );
    Element entry = getEntryElement();
    if ( interactionListElement != null ) {
      entry.insertBefore( experimentListElement, interactionListElement );
    } else if ( interactorListElement != null ) {
      entry.insertBefore( experimentListElement, interactorListElement );
    } else {
      entry.appendChild( experimentListElement );
    }
  }
  return experimentListElement;
}
uk.ac.ebi.intact.application.dataConversion.psiDownloadUserSessionDownloadgetPsiDocument

Javadoc

Return a PSI document. Create a new wmpty one if it doesn't exists yet.

Popular methods of UserSessionDownload

  • <init>
  • addMessage
  • createElement
  • createTextNode
  • declareAlreadyDefined
    Declare in the session that the given protein has been already converted in XML.
  • filterObsoleteAnnotationTopic
    Load all CvTopic and check which one have been flagged 'obsolete'. Those CvTopic are automatically a
  • getAvailabilityListElement
    Return the availabilityList element under the entry of the PSI document. If the element doesn't exis
  • getCvObjectCache
  • getEntryElement
    Return the entry element of the PSI document. If the element doesn't exist, it is created.
  • getExperimentIdentifier
    Get a specific identifier for the given experiemnt. If an identifier had already been affected for t
  • getExperimentListElement
    Return the experimentList element under the entry of the PSI document. If the element doesn't exist,
  • getFeatureIdentifier
    Get a specific identifier for the given feature. If an identifier had already been affected for that
  • getExperimentListElement,
  • getFeatureIdentifier,
  • getHostOrganismCache,
  • getInteractionIdentifier,
  • getInteractionListElement,
  • getInteractorIdentifier,
  • getInteractorListElement,
  • getMessages,
  • getNextClusterIdSuffix,
  • getNextObjectIdentifier

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