uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload.getOrganismCache java code examples

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Store in the cache the XML representation related to the given BioSource instance.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we wanted to comvert to XML.
 * @param element   The DOM root (as an Element) of the XML representation of the given BioSource.
 */
private static void updateOrganismCache( UserSessionDownload session, BioSource bioSource, Element element ) {
  Map cache = session.getOrganismCache();
  BioSource2xmlCommons.getInstance().updateCache( cache, bioSource, element );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

/**
 * Checks if the given BioSource has already been generated as XML content. <br> If so, that content is cloned which
 * is faster than recreating it.
 *
 * @param session   the user session in which the cache is stored.
 * @param bioSource the bioSource we want to check.
 *
 * @return the XML representation (as the root of a DOM tree) of the given BioSource, or null if it hasn't been
 *         generated  yet.
 */
private static Element getOrganismFromCache( UserSessionDownload session, BioSource bioSource ) {
  Map cache = session.getOrganismCache();
  return BioSource2xmlCommons.getInstance().getXmlFromCache( cache, bioSource );
}

Popular methods of UserSessionDownload

<init>
addMessage
createElement
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declareAlreadyDefined
Declare in the session that the given protein has been already converted in XML.
filterObsoleteAnnotationTopic
Load all CvTopic and check which one have been flagged 'obsolete'. Those CvTopic are automatically a
getAvailabilityListElement
Return the availabilityList element under the entry of the PSI document. If the element doesn't exis
getCvObjectCache
getEntryElement
Return the entry element of the PSI document. If the element doesn't exist, it is created.
getExperimentIdentifier
Get a specific identifier for the given experiemnt. If an identifier had already been affected for t
getExperimentListElement
Return the experimentList element under the entry of the PSI document. If the element doesn't exist,
getFeatureIdentifier
Get a specific identifier for the given feature. If an identifier had already been affected for that

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How to use getOrganismCachemethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload.getOrganismCache (Showing top 18 results out of 315)

How to use
getOrganismCache
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload