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UserSessionDownload.getInteractorIdentifier
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How to use
getInteractorIdentifier
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload.getInteractorIdentifier (Showing top 6 results out of 315)

origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param interactor the interactor for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getInteractorId( UserSessionDownload session, Interactor interactor ) {
  long id = session.getInteractorIdentifier( interactor );
  return "" + id;
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param protein the protein for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getProteinId( UserSessionDownload session, Protein protein ) {
  long id = session.getInteractorIdentifier( protein );
  return "" + id;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param interactor the interactor for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getInteractorId( UserSessionDownload session, Interactor interactor ) {
  long id = session.getInteractorIdentifier( interactor );
  return "" + id;
}
origin: uk.ac.ebi.intact.app/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param protein the protein for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getProteinId( UserSessionDownload session, Protein protein ) {
  long id = session.getInteractorIdentifier( protein );
  return "" + id;
}
origin: uk.ac.ebi.intact.util/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param interactor the interactor for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getInteractorId( UserSessionDownload session, Interactor interactor ) {
  long id = session.getInteractorIdentifier( interactor );
  return "" + id;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

/**
 * get the value what will be used as ID of the protein.
 *
 * @param protein the protein for which we need an ID.
 *
 * @return the ID of the protein.
 */
private String getProteinId( UserSessionDownload session, Protein protein ) {
  long id = session.getInteractorIdentifier( protein );
  return "" + id;
}
uk.ac.ebi.intact.application.dataConversion.psiDownloadUserSessionDownloadgetInteractorIdentifier

Javadoc

Get a specific identifier for the given interactor. If an identifier had already been affected for that interactor, the same is given again,

Popular methods of UserSessionDownload

  • <init>
  • addMessage
  • createElement
  • createTextNode
  • declareAlreadyDefined
    Declare in the session that the given protein has been already converted in XML.
  • filterObsoleteAnnotationTopic
    Load all CvTopic and check which one have been flagged 'obsolete'. Those CvTopic are automatically a
  • getAvailabilityListElement
    Return the availabilityList element under the entry of the PSI document. If the element doesn't exis
  • getCvObjectCache
  • getEntryElement
    Return the entry element of the PSI document. If the element doesn't exist, it is created.
  • getExperimentIdentifier
    Get a specific identifier for the given experiemnt. If an identifier had already been affected for t
  • getExperimentListElement
    Return the experimentList element under the entry of the PSI document. If the element doesn't exist,
  • getFeatureIdentifier
    Get a specific identifier for the given feature. If an identifier had already been affected for that
  • getExperimentListElement,
  • getFeatureIdentifier,
  • getHostOrganismCache,
  • getInteractionIdentifier,
  • getInteractionListElement,
  • getInteractorListElement,
  • getMessages,
  • getNextClusterIdSuffix,
  • getNextObjectIdentifier

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