How to use

getFeatureIdentifier

method

in

uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload

private Element createReference( UserSessionDownload session, Element parent, Feature feature, String type ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build a " +
                      PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                      DNA_FEATURE_REF_TAG_NAME + " / " +
                      RNA_FEATURE_REF_TAG_NAME + "." );
  } else {
    if ( !"participant".equals( parent.getNodeName() ) ) {
      throw new IllegalArgumentException( "You must give a <participant> to build a " +
                        PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                        DNA_FEATURE_REF_TAG_NAME + " / " +
                        RNA_FEATURE_REF_TAG_NAME + "." + "." );
    }
  }
  // 2. Initialising the element...
  Element element = session.createElement( type );
  element.setAttribute( "ref", "" + session.getFeatureIdentifier( feature ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

private Element createReference( UserSessionDownload session, Element parent, Feature feature, String type ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build a " +
                      PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                      DNA_FEATURE_REF_TAG_NAME + " / " +
                      RNA_FEATURE_REF_TAG_NAME + "." );
  } else {
    if ( !"participant".equals( parent.getNodeName() ) ) {
      throw new IllegalArgumentException( "You must give a <participant> to build a " +
                        PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                        DNA_FEATURE_REF_TAG_NAME + " / " +
                        RNA_FEATURE_REF_TAG_NAME + "." + "." );
    }
  }
  // 2. Initialising the element...
  Element element = session.createElement( type );
  element.setAttribute( "ref", "" + session.getFeatureIdentifier( feature ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

private Element createReference( UserSessionDownload session, Element parent, Feature feature, String type ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build a " +
                      PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                      DNA_FEATURE_REF_TAG_NAME + " / " +
                      RNA_FEATURE_REF_TAG_NAME + "." );
  } else {
    if ( !"participant".equals( parent.getNodeName() ) ) {
      throw new IllegalArgumentException( "You must give a <participant> to build a " +
                        PROTEIN_FEATURE_REF_TAG_NAME + " / " +
                        DNA_FEATURE_REF_TAG_NAME + " / " +
                        RNA_FEATURE_REF_TAG_NAME + "." + "." );
    }
  }
  // 2. Initialising the element...
  Element element = session.createElement( type );
  element.setAttribute( "ref", "" + session.getFeatureIdentifier( feature ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

Text refText = session.createTextNode( "" + session.getFeatureIdentifier( feature ) );
element.appendChild( refText );

Text refText = session.createTextNode( "" + session.getFeatureIdentifier( feature ) );
element.appendChild( refText );

Text refText = session.createTextNode( "" + session.getFeatureIdentifier( feature ) );
element.appendChild( refText );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );

element.setAttribute( "id", "" + session.getFeatureIdentifier( feature ) );