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CvMapping.getPsiReference
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How to use
getPsiReference
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.CvMapping

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.CvMapping.getPsiReference (Showing top 3 results out of 315)

origin: uk.ac.ebi.intact.util/data-conversion

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );
origin: uk.ac.ebi.intact.app/data-conversion

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );
uk.ac.ebi.intact.application.dataConversion.psiDownloadCvMappinggetPsiReference

Javadoc

Extract from the given CV term its PSI-MI id (if any).

Popular methods of CvMapping

  • <init>
    Construct a CvMapping object.
  • addMapping
    Add an association into the map. It takes care of : * circular mapping (a term to itself) * mapp
  • getPSI2toPSI1
    If there is a mapping available, replace the given CV by an other one.
  • getSimpleName
    Get the simple name of a Class Object.
  • loadFile
    Load a tabulation separated flat file having the following format:
  • loadSerializedMap
    Load mapping from a serialized file. The format is as follow: count of associations
  • serializeMapping
    Serialize the CV mapping into a file. count of associations from

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