- displayUsage
Displays usage for the program.
- filterInteractions
It take an interactions Collection and remove from it all the interactions
having a NucleicAcid as c
- generateData
Convert a list of experiment into PSI XML
- generatePsiData
Generates a PSI MI formatted file for a searchPattern. Large scale Experiments
will typically be a s
- getExperiments
Obtains the data from the dataSource, in preparation for the flat file
generation.
- setupCommandLineOptions
Setup the command line options.
- write
Write an Element (supposingly the root of a document) into a file.