Public

displayUsage

It take an interactions Collection and remove from it all the interactions
having a NucleicAcid as c

filterInteractions

Convert a list of experiment into PSI XML

generateData

Generates a PSI MI formatted file for a searchPattern. Large scale Experiments
will typically be a s

generatePsiData

Obtains the data from the dataSource, in preparation for the flat file
generation.

getExperiments

processLargeExperiment

setupCommandLineOptions

Write an Element (supposingly the root of a document) into a file.

write

Gson

Running tasks concurrently on multiple threads

This class represents a server-side socket that waits for incoming client
connections. A ServerSocke

java.net.ServerSocket

A charset is a named mapping between Unicode characters and byte sequences.
Every Charset can decode

java.nio.charset.Charset

Uses a one-way hash function to turn an arbitrary number of bytes into a
fixed-length byte sequence.

java.security.MessageDigest

A Handler object accepts a logging request and exports the desired messages to a
target, for example

java.util.logging.Handler

A sequence of elements supporting sequential and parallel aggregate operations.
The following exampl

java.util.stream.Stream

General IO stream manipulation utilities. This class provides static utility
methods for input/outpu

org.apache.commons.io.IOUtils

requestLocationUpdates

startActivity

getApplicationContext

/**
     * Convert a list of experiment into PSI XML
     *
     * @param experiments a list of experiment to export in PSI XML
     * @param session     the PSI doanload session.
     *
     * @return the generated XML Document
     */

// Psi 1 do not tolerate Nucleic Acid as Participant of an Interaction. So if psi verstion is psi1 we

// filter out all the Interactions having a Nucleic Acid as a participant. Then we check, if there is no

// any more interactions linked to the experiment, we do not process it.

// in order to have them in that order, experimentList, then interactorList, at last interactionList.

How to use filterInteractionsmethodin uk.ac.ebi.intact.application.dataConversion.FileGenerator

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.FileGenerator.filterInteractions (Showing top 3 results out of 315)

How to use
filterInteractions
method
in
uk.ac.ebi.intact.application.dataConversion.FileGenerator