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ExperimentListGenerator.classifyExperiments
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How to use
classifyExperiments
method
in
uk.ac.ebi.intact.application.dataConversion.ExperimentListGenerator

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.ExperimentListGenerator.classifyExperiments (Showing top 15 results out of 315)

origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public Map<String, String> getExperimentWithErrors() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  return experimentsWithErrors;
}
origin: uk.ac.ebi.intact.app/data-conversion

public Map<String, String> getExperimentWithErrors() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  return experimentsWithErrors;
}
origin: uk.ac.ebi.intact.util/data-conversion

public Map<String, String> getExperimentWithErrors() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  return experimentsWithErrors;
}
origin: uk.ac.ebi.intact.util/data-conversion

public List<ExperimentListItem> generateClassificationBySpecies() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( speciesListItems != null && !speciesListItems.isEmpty() ) {
    return speciesListItems;
  }
  createItemClassificationBySpecies();
  return speciesListItems;
}
origin: uk.ac.ebi.intact.app/data-conversion

public List<ExperimentListItem> generateClassificationByPublications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( publicationsListItems != null && !publicationsListItems.isEmpty() ) {
    return publicationsListItems;
  }
  createItemClassificationByPubmed();
  return publicationsListItems;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public List<ExperimentListItem> generateClassificationByDatasets() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( datasetsListItems != null && !datasetsListItems.isEmpty() ) {
    return datasetsListItems;
  }
  createItemClassificationByDataset();
  return datasetsListItems;
}
origin: uk.ac.ebi.intact.util/data-conversion

public List<ExperimentListItem> generateClassificationByDatasets() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( datasetsListItems != null && !datasetsListItems.isEmpty() ) {
    return datasetsListItems;
  }
  createItemClassificationByDataset();
  return datasetsListItems;
}
origin: uk.ac.ebi.intact.app/data-conversion

public List<ExperimentListItem> generateClassificationBySpecies() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( speciesListItems != null && !speciesListItems.isEmpty() ) {
    return speciesListItems;
  }
  createItemClassificationBySpecies();
  return speciesListItems;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public List<ExperimentListItem> generateClassificationByPublications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( publicationsListItems != null && !publicationsListItems.isEmpty() ) {
    return publicationsListItems;
  }
  createItemClassificationByPubmed();
  return publicationsListItems;
}
origin: uk.ac.ebi.intact.util/data-conversion

public List<ExperimentListItem> generateClassificationByPublications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( publicationsListItems != null && !publicationsListItems.isEmpty() ) {
    return publicationsListItems;
  }
  createItemClassificationByPubmed();
  return publicationsListItems;
}
origin: uk.ac.ebi.intact.app/data-conversion

public List<ExperimentListItem> generateClassificationByDatasets() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( datasetsListItems != null && !datasetsListItems.isEmpty() ) {
    return datasetsListItems;
  }
  createItemClassificationByDataset();
  return datasetsListItems;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public List<ExperimentListItem> generateClassificationBySpecies() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  if ( speciesListItems != null && !speciesListItems.isEmpty() ) {
    return speciesListItems;
  }
  createItemClassificationBySpecies();
  return speciesListItems;
}
origin: uk.ac.ebi.intact.util/data-conversion

public List<ExperimentListItem> generateAllClassifications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  List<ExperimentListItem> allItems = new ArrayList<ExperimentListItem>();
  allItems.addAll( generateClassificationBySpecies() );
  allItems.addAll( generateClassificationByPublications() );
  return allItems;
}
origin: uk.ac.ebi.intact.app/data-conversion

public List<ExperimentListItem> generateAllClassifications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  List<ExperimentListItem> allItems = new ArrayList<ExperimentListItem>();
  allItems.addAll( generateClassificationBySpecies() );
  allItems.addAll( generateClassificationByPublications() );
  return allItems;
}
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

public List<ExperimentListItem> generateAllClassifications() {
  if ( !experimentsClassified ) {
    classifyExperiments();
  }
  List<ExperimentListItem> allItems = new ArrayList<ExperimentListItem>();
  allItems.addAll( generateClassificationBySpecies() );
  allItems.addAll( generateClassificationByPublications() );
  return allItems;
}
uk.ac.ebi.intact.application.dataConversionExperimentListGeneratorclassifyExperiments

Javadoc

Classify experiments matching searchPattern into a data structure according to species and experiment size.

Popular methods of ExperimentListGenerator

  • addToList
  • classifyNegatives
    Checks for a negative interaction. NB This will have to be done using SQL otherwise we end up materi
  • createExpListItems
  • createExperimentListItems
  • createItemClassificationByDataset
    Build the classification by dataset. We keep the negative experiment separated from the non negative
  • createItemClassificationByPubmed
    Build the classification by pubmed id. We keep the negative experiment separated from the non negati
  • createItemClassificationBySpecies
  • generateClassificationByPublications
  • generateClassificationBySpecies
  • getCreatedYear
    Given a set of Experiments, it returns the year of the date of creation of the oldest experiment.
  • getDaoFactory
  • getDatasets
    Fetch dataset information (if any) from experiment.
  • getDaoFactory,
  • getDatasets,
  • getExperiments,
  • getFilteredExperimentAcs,
  • getNegativeExperiments,
  • getPubmedId,
  • getTargetSpecies,
  • interactionsForExperiment,
  • isNegative

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