@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { logger.info("-------------------------------------"); logger.info("Loading Annotations using TSV loader."); logger.info("-------------------------------------"); this.g = g; loadConf(conf); loadTSV(conf.getLoc()); logger.info("TSV specification loaded."); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { logger.info("-------------------------------------"); logger.info("Loading CSV."); logger.info("-------------------------------------"); this.g = g; loadConf(conf); loadCSV(conf.getLoc()); logger.info("CSV specification loaded."); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { logger.info("-------------------------------------"); logger.info("Loading Annotations using TSV loader."); logger.info("-------------------------------------"); this.g = g; loadConf(conf); loadTSV(conf.getLoc()); logger.info("TSV specification loaded."); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { loadConf(conf); logger.info("-------------------------------------"); logger.info(" RDF Loader"); logger.info("-------------------------------------"); logger.info("Populate graph " + g.getURI() + " from " + conf.getLoc()); load(g, conf.getLoc()); logger.info("Graph " + g.getURI() + " populated by RDF data "); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { logger.info("-------------------------------------"); logger.info("Loading CSV."); logger.info("-------------------------------------"); this.g = g; loadConf(conf); loadCSV(conf.getLoc()); logger.info("CSV specification loaded."); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { loadConf(conf); logger.info("-------------------------------------"); logger.info(" RDF Loader"); logger.info("-------------------------------------"); logger.info("Populate graph " + g.getURI() + " from " + conf.getLoc()); load(g, conf.getLoc()); logger.info("Graph " + g.getURI() + " populated by RDF data "); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { String defaultNamespaceVal = (String) conf.getParameter("default-namespace"); if (defaultNamespaceVal == null) { defaultNamespace = g.getURI().getNamespace(); logger.info("OBO loader set default-namespace " + defaultNamespace); } else { defaultNamespace = defaultNamespaceVal; } init(g, conf.getLoc(), defaultNamespace); logger.info("-------------------------------------"); logger.info("Loading OBO specification from:" + filepath); logger.info("-------------------------------------"); loadOboSpec(); logger.info("OBO specification loaded."); logger.info("-------------------------------------"); }
@Override public void populate(GDataConf conf, G g) throws SLIB_Exception { String defaultNamespaceVal = (String) conf.getParameter("default-namespace"); if (defaultNamespaceVal == null) { defaultNamespace = g.getURI().getNamespace(); logger.info("OBO loader set default-namespace " + defaultNamespace); } else { defaultNamespace = defaultNamespaceVal; } init(g, conf.getLoc(), defaultNamespace); logger.info("-------------------------------------"); logger.info("Loading OBO specification from:" + filepath); logger.info("-------------------------------------"); loadOboSpec(); logger.info("OBO specification loaded."); logger.info("-------------------------------------"); }
/** * Populate a given graph considering a configuration. * * @param dataConf the object defining the configuration of the data to load * @param g the graph to populate with the data * @return the graph which have been populated. The treatment is performed * in place, i.e. no extra graph is created and the reference to the graph * returned will be the same as the one passed in parameter. * * @throws SLIB_Exception if an error is encountered during loading. */ public static G populate(GDataConf dataConf, G g) throws SLIB_Exception { logger.debug("Populate " + g.getURI() + " based on " + dataConf.getLoc()); GraphLoader gLoader = getLoader(dataConf); gLoader.populate(dataConf, g); return g; }
/** * Populate a given graph considering a configuration. * * @param dataConf the object defining the configuration of the data to load * @param g the graph to populate with the data * @return the graph which have been populated. The treatment is performed * in place, i.e. no extra graph is created and the reference to the graph * returned will be the same as the one passed in parameter. * * @throws SLIB_Exception if an error is encountered during loading. */ public static G populate(GDataConf dataConf, G g) throws SLIB_Exception { logger.debug("Populate " + g.getURI() + " based on " + dataConf.getLoc()); GraphLoader gLoader = getLoader(dataConf); gLoader.populate(dataConf, g); return g; }
logger.info("file " + conf.getLoc()); logger.info("Skipping header " + skipHeader); logger.info("predicate '" + predicate + "'");
this.filepath = conf.getLoc(); logger.info("-------------------------------------"); logger.info(" SLIB loader");
this.filepath = conf.getLoc(); logger.info("-------------------------------------"); logger.info(" SLIB loader");
logger.info("file " + conf.getLoc()); logger.info("Skipping header " + skipHeader); logger.info("predicate '" + predicate + "'");
String filepath = conf.getLoc();
String filepath = conf.getLoc();
String filepath = conf.getLoc();
Pattern p_taxid = null; String fileLocation = conf.getLoc();
saxParser.parse(conf.getLoc(), new MeshXMLHandler(this));
saxParser.parse(conf.getLoc(), new MeshXMLHandler(this));