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Interactor.getXrefs
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How to use
getXrefs
method
in
psidev.psi.mi.jami.model.Interactor

Best Java code snippets using psidev.psi.mi.jami.model.Interactor.getXrefs (Showing top 5 results out of 315)

origin: psidev.psi.mi.jami/jami-core

/***
 * This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.
 * @param source
 * @param target
 */
public static void copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target){
  if (source != null && target != null){
    target.setShortName(source.getShortName());
    target.setFullName(source.getFullName());
    target.setInteractorType(source.getInteractorType());
    target.setOrganism(source.getOrganism());
    // copy collections
    target.getAnnotations().clear();
    target.getAnnotations().addAll(source.getAnnotations());
    target.getIdentifiers().clear();
    target.getIdentifiers().addAll(source.getIdentifiers());
    target.getAliases().clear();
    target.getAliases().addAll(source.getAliases());
    target.getXrefs().clear();
    target.getXrefs().addAll(source.getXrefs());
    target.getChecksums().clear();
    target.getChecksums().addAll(source.getChecksums());
  }
}
origin: psidev.psi.mi.jami/jami-mitab

interactor.getXrefs().addAll(xref);
origin: psidev.psi.mi.jami/jami-mitab

if (!participant.getInteractor().getXrefs().isEmpty()){
  Iterator<Xref> interactorXrefIterator = participant.getInteractor().getXrefs().iterator();
origin: psidev.psi.mi/psimi-schema-validator

Collection<Xref> databaseReferences = container.getXrefs();
origin: psidev.psi.mi/psimi-schema-validator

for (Xref ref : interactor.getXrefs()){
  checkXref(messages, ref, interactor, "interactor");
psidev.psi.mi.jami.modelInteractorgetXrefs

Javadoc

Collection of other xrefs that give more information about the interactor. Ex: GO references to gives function/process/location information

Popular methods of Interactor

  • getShortName
    The short name of the interactor. It cannot be null or empty. Ex: brca2
  • getAliases
    Collection of aliases for an interactor The Collection cannot be null and if the interactor does not
  • getAnnotations
    Collection of annotations for an interactor. The set cannot be null and if the interactor does not h
  • getIdentifiers
    Set of identifiers for this interactor. The identifiers can be from different databases, can be prim
  • getInteractorType
    The molecule type of this interactor. It is a controlled vocabulary term and cannot be null. Ex: pro
  • getOrganism
    The original source organism for this interactor. It can be null in case of chemical compounds/synth
  • getChecksums
    Set of checksums computed for this interactor. The Collection cannot be null so when an interactor d
  • getFullName
    The full name of the interactor. It can be null Ex: Breast cancer type 2 susceptibility protein
  • getPreferredIdentifier
    The identifier in the list of identifiers which is the preferred identifier. If no identifiers is pr
  • setFullName
    Sets the full name of the interactor
  • setOrganism
    Sets the source organism of this interactor
  • setInteractorType
    Sets the molecule type for this interactor If the given type is null, this method automatically sets
  • setOrganism,
  • setInteractorType,
  • setShortName

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