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Interactor.getFullName
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How to use
getFullName
method
in
psidev.psi.mi.jami.model.Interactor

Best Java code snippets using psidev.psi.mi.jami.model.Interactor.getFullName (Showing top 6 results out of 315)

origin: psidev.psi.mi.jami/jami-core

public void onFullNameUpdate(T protein, String oldFullName) {
  if (oldFullName == null){
    interactorChangeLogger.log(Level.INFO, "The full name has been initialised for the interactor " + protein.toString());
  }
  else if (protein.getFullName() == null){
    interactorChangeLogger.log(Level.INFO, "The full name has been reset for the interactor " + protein.toString());
  }
  else {
    interactorChangeLogger.log(Level.INFO, "The full name " + oldFullName + " has been updated with " + protein.getFullName() + " in the interactor " + protein.toString());
  }
}
origin: psidev.psi.mi.jami/jami-mitab

if (interactor.getFullName() != null){
  writer.write("|");
  writer.write(CvTerm.PSI_MI);
  writer.write(":");
  escapeAndWriteString(interactor.getFullName());
  writer.write("(");
  writer.write(MitabUtils.DISPLAY_LONG);
origin: psidev.psi.mi.jami/jami-core

hashcode = 31*hashcode + (interactor.getFullName() != null ? interactor.getFullName().hashCode() : 0);
origin: psidev.psi.mi.jami/jami-core

String fullName1 = interactor1.getFullName();
String fullName2 = interactor2.getFullName();
if (fullName1 != null && fullName2 != null){
  if(fullName1.equals(fullName2)){
origin: psidev.psi.mi.jami/jami-core

String fullName1 = interactor1.getFullName();
String fullName2 = interactor2.getFullName();
if (fullName1 == null && fullName2 == null){
  comp = 0;
origin: psidev.psi.mi.jami/jami-core

/***
 * This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.
 * @param source
 * @param target
 */
public static void copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target){
  if (source != null && target != null){
    target.setShortName(source.getShortName());
    target.setFullName(source.getFullName());
    target.setInteractorType(source.getInteractorType());
    target.setOrganism(source.getOrganism());
    // copy collections
    target.getAnnotations().clear();
    target.getAnnotations().addAll(source.getAnnotations());
    target.getIdentifiers().clear();
    target.getIdentifiers().addAll(source.getIdentifiers());
    target.getAliases().clear();
    target.getAliases().addAll(source.getAliases());
    target.getXrefs().clear();
    target.getXrefs().addAll(source.getXrefs());
    target.getChecksums().clear();
    target.getChecksums().addAll(source.getChecksums());
  }
}
psidev.psi.mi.jami.modelInteractorgetFullName

Javadoc

The full name of the interactor. It can be null Ex: Breast cancer type 2 susceptibility protein

Popular methods of Interactor

  • getShortName
    The short name of the interactor. It cannot be null or empty. Ex: brca2
  • getAliases
    Collection of aliases for an interactor The Collection cannot be null and if the interactor does not
  • getAnnotations
    Collection of annotations for an interactor. The set cannot be null and if the interactor does not h
  • getIdentifiers
    Set of identifiers for this interactor. The identifiers can be from different databases, can be prim
  • getInteractorType
    The molecule type of this interactor. It is a controlled vocabulary term and cannot be null. Ex: pro
  • getOrganism
    The original source organism for this interactor. It can be null in case of chemical compounds/synth
  • getChecksums
    Set of checksums computed for this interactor. The Collection cannot be null so when an interactor d
  • getXrefs
    Collection of other xrefs that give more information about the interactor. Ex: GO references to give
  • getPreferredIdentifier
    The identifier in the list of identifiers which is the preferred identifier. If no identifiers is pr
  • setFullName
    Sets the full name of the interactor
  • setOrganism
    Sets the source organism of this interactor
  • setInteractorType
    Sets the molecule type for this interactor If the given type is null, this method automatically sets
  • setOrganism,
  • setInteractorType,
  • setShortName

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