How to use

getChecksums

method

in

psidev.psi.mi.jami.model.Interactor

public void writeParticipantChecksums(P participant) throws IOException {
  if (participant != null){
    if (!participant.getInteractor().getChecksums().isEmpty()){
      Iterator<Checksum> checksumIterator = participant.getInteractor().getChecksums().iterator();
      while(checksumIterator.hasNext()){
        writeChecksum(checksumIterator.next());
        if (checksumIterator.hasNext()){
          getWriter().write(MitabUtils.FIELD_SEPARATOR);
        }
      }
    }
    else{
      getWriter().write(MitabUtils.EMPTY_COLUMN);
    }
  }
  else {
    getWriter().write(MitabUtils.EMPTY_COLUMN);
  }
}

protected void createChecksumFromAltId(Interactor interactor, MitabXref ref) {
  // create checksum from xref
  MitabChecksum checksum = new MitabChecksum(ref.getDatabase(), ref.getId(), ref.getSourceLocator());
  interactor.getChecksums().add(checksum);
  if (listener != null){
    listener.onSyntaxWarning(ref, "Found a Checksum in the alternative identifiers column. Will load it as a checksum.");
  }
}

protected void createChecksumFromAlias(Interactor interactor, MitabAlias alias) {
  // create checksum from alias
  MitabChecksum checksum = new MitabChecksum(alias.getType(), alias.getName(), alias.getSourceLocator());
  interactor.getChecksums().add(checksum);
  if (listener != null){
    listener.onSyntaxWarning(alias, "Found a Checksum in the aliases column. Will load it as a checksum.");
  }
}

/***
 * This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.
 * @param source
 * @param target
 */
public static void copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target){
  if (source != null && target != null){
    target.setShortName(source.getShortName());
    target.setFullName(source.getFullName());
    target.setInteractorType(source.getInteractorType());
    target.setOrganism(source.getOrganism());
    // copy collections
    target.getAnnotations().clear();
    target.getAnnotations().addAll(source.getAnnotations());
    target.getIdentifiers().clear();
    target.getIdentifiers().addAll(source.getIdentifiers());
    target.getAliases().clear();
    target.getAliases().addAll(source.getAliases());
    target.getXrefs().clear();
    target.getXrefs().addAll(source.getXrefs());
    target.getChecksums().clear();
    target.getChecksums().addAll(source.getChecksums());
  }
}

interactor.getChecksums().addAll(checksum);

for (Checksum a : interactor.getChecksums()){
  checkChecksum(messages, a, interactor, "interactor");