- getLeafLabels
The set of labels of all leafs below the input tree node
- pruneDegreeOneNodes
- commonLeaves
Returns the list of leaves contained in all trees
- deleteInnerLabels
Clones all trees and removes all innter vertex labels from the clones. The given
source trees are no
- getChildrenMap
- pruneInnerNode
Deletes the specified node from the tree.The child of this node becomes child of
its parent. If the
- removeSubtreeFromTree
- reorderingBootstrapLabelsForRooting
- rerootToOutgroup
Reroot tree with the new root placed at the incomming edge of the given outgroup
- buildFitchUnion
- calculateTreeResolution
- checkForChilds