How to use

getOWLDeprecated

method

in

org.semanticweb.owlapi.model.OWLDataFactory

/**
 * Adds an annotation assertion that specifies that the entity is deprecated.
 *
 * @param changes A list of changes that the enacting change will be added to.
 */
private void addDeprecatedAnnotationAssertion(@Nonnull List<OWLOntologyChange> changes) {
  OWLAnnotationAxiom ax = dataFactory.getOWLAnnotationAssertionAxiom(
      dataFactory.getOWLDeprecated(),
      info.getEntityToDeprecate().getIRI(),
      dataFactory.getOWLLiteral(true)
  );
  logger.info("[Deprecate Entity] Added owl:deprecated annotation");
  changes.add(new AddAxiom(getHomeOntology(), ax));
}

  @Override
  public void handle(String currentId, String value, String qualifierBlock, String comment) {
    OWLDataFactory df = getDataFactory();
    OWLAnnotationProperty deprecatedProperty = df.getOWLDeprecated();
    OWLLiteral annotationValue = df.getOWLLiteral(true);
    IRI subject = getIRIFromOBOId(currentId);
    OWLAnnotationAssertionAxiom ax = df
      .getOWLAnnotationAssertionAxiom(deprecatedProperty, subject,
        annotationValue);
    applyChange(new AddAxiom(getOntology(), ax));
  }
}

  @Override
  public void handle(String currentId, String value, String qualifierBlock, String comment) {
    OWLDataFactory df = getDataFactory();
    OWLAnnotationProperty deprecatedProperty = df.getOWLDeprecated();
    OWLLiteral annotationValue = df.getOWLLiteral(true);
    IRI subject = getIRIFromOBOId(currentId);
    OWLAnnotationAssertionAxiom ax = df.getOWLAnnotationAssertionAxiom(deprecatedProperty, subject, annotationValue);
    applyChange(new AddAxiom(getOntology(), ax));
  }
}

  public void handle(String currentId, String value, String qualifierBlock, String comment) {
    OWLDataFactory df = getDataFactory();
    OWLAnnotationProperty deprecatedProperty = df.getOWLDeprecated();
    OWLLiteral annotationValue = df.getOWLLiteral(true);
    IRI subject = getIRIFromOBOId(currentId);
    OWLAnnotationAssertionAxiom ax = df.getOWLAnnotationAssertionAxiom(deprecatedProperty, subject, annotationValue);
    applyChange(new AddAxiom(getOntology(), ax));
  }
}

  @Override
  public void handle(String currentId, String value, String qualifierBlock, String comment) {
    OWLDataFactory df = getDataFactory();
    OWLAnnotationProperty deprecatedProperty = df.getOWLDeprecated();
    OWLLiteral annotationValue = df.getOWLLiteral(true);
    IRI subject = getIRIFromOBOId(currentId);
    OWLAnnotationAssertionAxiom ax = df
      .getOWLAnnotationAssertionAxiom(deprecatedProperty, subject,
        annotationValue);
    applyChange(new AddAxiom(getOntology(), ax));
  }
}

  @Override
  public void handle(String currentId, String value, String qualifierBlock, String comment) {
    OWLDataFactory df = getDataFactory();
    OWLAnnotationProperty deprecatedProperty = df.getOWLDeprecated();
    OWLLiteral annotationValue = df.getOWLLiteral(true);
    IRI subject = getIRIFromOBOId(currentId);
    OWLAnnotationAssertionAxiom ax = df
      .getOWLAnnotationAssertionAxiom(deprecatedProperty, subject,
        annotationValue);
    applyChange(new AddAxiom(getOntology(), ax));
  }
}

  public boolean isRetirementAxiom(OWLAxiom axiom) {
    boolean ret = false;
    if (axiom instanceof OWLSubClassOfAxiom) {
      OWLSubClassOfAxiom subClassAxiom = (OWLSubClassOfAxiom) axiom;
      ret = !subClassAxiom.getSubClass().isAnonymous() && 
          !subClassAxiom.getSuperClass().isAnonymous() &&
          subClassAxiom.getSuperClass().asOWLClass().getIRI().toString().startsWith(retirementClassPrefix);
    }
    else if (axiom instanceof OWLAnnotationAssertionAxiom && retirementStatusProperty != null) {
      OWLAnnotationAssertionAxiom annotationAxiom = (OWLAnnotationAssertionAxiom) axiom;
      OWLAnnotationProperty property = annotationAxiom.getAnnotation().getProperty();
      if (property.equals(retirementStatusProperty)) {
        ret = annotationAxiom.getAnnotation().getValue() instanceof OWLLiteral
             && ((OWLLiteral) annotationAxiom.getAnnotation().getValue()).getLiteral().equals(retirementStatusString);
      }
      else if (property.equals(factory.getOWLDeprecated())) {
        ret = annotationAxiom.getAnnotation().getValue() instanceof OWLLiteral
             && ((OWLLiteral) annotationAxiom.getAnnotation().getValue()).getLiteral().toLowerCase().equals("true");
      }
      else if (retirementMetaProperties.contains(property)) {
        ret = true;
      }
    }
    return ret;
  }
}

  public boolean isRetirementAxiom(OWLAxiom axiom) {
    boolean ret = false;
    if (axiom instanceof OWLSubClassOfAxiom) {
      OWLSubClassOfAxiom subClassAxiom = (OWLSubClassOfAxiom) axiom;
      ret = !subClassAxiom.getSubClass().isAnonymous() && 
          !subClassAxiom.getSuperClass().isAnonymous() &&
          subClassAxiom.getSuperClass().asOWLClass().getIRI().toString().startsWith(retirementClassPrefix);
    }
    else if (axiom instanceof OWLAnnotationAssertionAxiom && retirementStatusProperty != null) {
      OWLAnnotationAssertionAxiom annotationAxiom = (OWLAnnotationAssertionAxiom) axiom;
      OWLAnnotationProperty property = annotationAxiom.getAnnotation().getProperty();
      if (property.equals(retirementStatusProperty)) {
        ret = annotationAxiom.getAnnotation().getValue() instanceof OWLLiteral
             && ((OWLLiteral) annotationAxiom.getAnnotation().getValue()).getLiteral().equals(retirementStatusString);
      }
      else if (property.equals(factory.getOWLDeprecated())) {
        ret = annotationAxiom.getAnnotation().getValue() instanceof OWLLiteral
             && ((OWLLiteral) annotationAxiom.getAnnotation().getValue()).getLiteral().toLowerCase().equals("true");
      }
      else if (retirementMetaProperties.contains(property)) {
        ret = true;
      }
    }
    return ret;
  }
}

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public boolean isDeprecated(OWLEntity e, DifferencePosition position) {
  OWLOntology ontology = position.getOntology(engine.getOwlDiffMap());
  for (OWLOntology ont : ontology.getImportsClosure()) {
    for (OWLAnnotation annotation : e.getAnnotations(ont, engine.getOWLDataFactory().getOWLDeprecated())) {
      if (!(annotation.getValue() instanceof OWLLiteral)) {
        continue;
      }
      OWLLiteral value = (OWLLiteral) annotation.getValue();
      if (!value.isBoolean()) {
        continue;
      }
      if (value.parseBoolean()) {
        return true;
      }
    }
  }
  return false;
}

public boolean isDeprecated(OWLEntity e, DifferencePosition position) {
  OWLOntology ontology = position.getOntology(engine.getOwlDiffMap());
  OWLAnnotationProperty deprecated = engine.getOWLDataFactory().getOWLDeprecated();
  for (OWLOntology ont : ontology.getImportsClosure()) {
    for (OWLAnnotation annotation : EntitySearcher.getAnnotations(e, ont, deprecated)) {
      if (!(annotation.getValue() instanceof OWLLiteral)) {
        continue;
      }
      OWLLiteral value = (OWLLiteral) annotation.getValue();
      if (!value.isBoolean()) {
        continue;
      }
      if (value.parseBoolean()) {
        return true;
      }
    }
  }
  return false;
}

public OWLModelManagerImpl() {
  super();
  manager = OntologyManagerFactory.createManager();
  manager.addOntologyChangeListener(this);
  objectRenderer = new OWLObjectRendererImpl(this);
  owlEntityRenderingCache = new OWLEntityRenderingCacheImpl();
  owlEntityRenderingCache.setOWLModelManager(this);
  owlObjectRenderingCache = new OWLObjectRenderingCache(this);
  owlExpressionCheckerFactory = new ManchesterOWLExpressionCheckerFactory(this);
  //needs to be initialized
  activeOntologiesStrategy = new ImportsClosureOntologySelectionStrategy(this);
  historyManager = new HistoryManagerImpl(this);
  owlReasonerManager = new OWLReasonerManagerImpl(this);
  owlReasonerManager.getReasonerPreferences().addListener(() -> fireEvent(EventType.ONTOLOGY_CLASSIFIED));
  deprecationCache = new DeprecationCache(manager.getOWLDataFactory().getOWLDeprecated());
  // force the renderer to be created
  // to prevent double cache rebuild once ontologies loaded
  getOWLEntityRenderer();
  put(OntologySourcesManager.ID, new OntologySourcesManager(this));
}