How to use

getOWLAnnotation

method

in

org.semanticweb.owlapi.model.OWLDataFactory

  public Optional<OWLAnnotation> getAnnotation(OWLDataFactory dataFactory) {
    Optional<OWLAnnotationValue> annotationValue = annotationValueProvider.getAnnotationValue(dataFactory);
    return annotationValue.map(v -> {
          IRI iri = annotationPropertyIriProvider.get();
          OWLAnnotationProperty property = dataFactory.getOWLAnnotationProperty(iri);
          return dataFactory.getOWLAnnotation(property, annotationValue.get());
        }
    );
  }
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value))}
 *
 * @param value The annotation value.
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(OWLAnnotationValue value) {
  return getOWLAnnotation(getRDFSComment(), value);
}

public static OWLAnnotationAssertionAxiom comment(OWLEntity entity, String comment) {
  return factory.getOWLAnnotationAssertionAxiom( entity.getIRI(), factory.getOWLAnnotation(
      factory.getOWLAnnotationProperty( OWLRDFVocabulary.RDFS_COMMENT.getIRI() ), 
      factory.getOWLLiteral( comment ) ) );
  
}

  private OWLAnnotationAssertionAxiom convertToAnnotation(OWLNamedIndividual ind,
    OWLDataPropertyAssertionAxiom ax) {
    OWLDataProperty hasIRI = ax.getProperty().asOWLDataProperty();
    OWLAnnotation anno = df
      .getOWLAnnotation(df.getOWLAnnotationProperty(hasIRI), ax.getObject());
    return df.getOWLAnnotationAssertionAxiom(ind.getIRI(), anno);
  }
}

public Optional<OWLAnnotation> getAnnotation(OWLDataFactory dataFactory) {
  Optional<OWLAnnotationValue> annotationValue = annotationValueProvider.getAnnotationValue(dataFactory);
  return annotationValue.map(v -> {
        IRI iri = annotationPropertyIriProvider.get();
        OWLAnnotationProperty property = dataFactory.getOWLAnnotationProperty(iri);
        return dataFactory.getOWLAnnotation(property, annotationValue.get());
      }
  );
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value))}
 *
 * @param value The annotation value.
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(OWLAnnotationValue value) {
  return getOWLAnnotation(getRDFSComment(), value);
}

  private static void addVersion(OWLOntology ontology, String version, OWLOntologyManager manager){
    OWLDataFactory fac = manager.getOWLDataFactory();
    
    OWLAnnotationProperty ap = fac.getOWLAnnotationProperty( Obo2Owl.trTagToIRI(OboFormatTag.TAG_REMARK.getTag()));
    OWLAnnotation ann = fac.getOWLAnnotation(ap, fac.getOWLLiteral(version));
    
    OWLAxiom ax = fac.getOWLAnnotationAssertionAxiom(ontology.getOntologyID().getOntologyIRI(), ann);
    
    manager.applyChange(new AddAxiom(ontology, ax));

    
  }
}

  private OWLAnnotation getSynonymTypeAnnotation(Matcher matcher) {
    OWLDataFactory df = getDataFactory();
    String synonymType = matcher.group(SYNONYM_TYPE_GROUP);
    return df.getOWLAnnotation(df.getOWLAnnotationProperty(SYNONYM_TYPE_IRI),
      df.getOWLLiteral(synonymType));
  }
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSLabel(), getOWLLiteral(value), annotations)}
 *
 * @param value The annotation value.
 * @param annotations annotations
 * @return an rdfs:label annotation with provided value
 */
default OWLAnnotation getRDFSLabel(OWLAnnotationValue value,
  Stream<OWLAnnotation> annotations) {
  return getOWLAnnotation(getRDFSLabel(), value, annotations);
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value))}
 *
 * @param value The annotation value.
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(String value) {
  return getOWLAnnotation(getRDFSComment(), getOWLLiteral(value));
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value))}
 *
 * @param value The annotation value.
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(String value) {
  return getOWLAnnotation(getRDFSComment(), getOWLLiteral(value));
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value), annotations)}
 *
 * @param value The annotation value.
 * @param annotations annotations
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(String value, Stream<OWLAnnotation> annotations) {
  return getOWLAnnotation(getRDFSComment(), getOWLLiteral(value), annotations);
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSLabel(), getOWLLiteral(value))}
 *
 * @param value The annotation value.
 * @return an rdfs:label annotation with provided value
 */
default OWLAnnotation getRDFSLabel(String value) {
  return getOWLAnnotation(getRDFSLabel(), getOWLLiteral(value));
}

/**
 * Shorthand for
 * {@code getOWLAnnotation(getRDFSComment(), getOWLLiteral(value), annotations)}
 *
 * @param value The annotation value.
 * @param annotations annotations
 * @return an rdfs:comment annotation with provided value
 */
default OWLAnnotation getRDFSComment(String value, Stream<OWLAnnotation> annotations) {
  return getOWLAnnotation(getRDFSComment(), getOWLLiteral(value), annotations);
}

@Override
public Object read(OWLInputStream in) throws IOException {
  OWLAnnotationProperty property = (OWLAnnotationProperty) in.read();
  OWLAnnotationValue value = (OWLAnnotationValue) in.read();
  return in.getOWLDataFactory().getOWLAnnotation(property, value);
}

@Override
public OWLAnnotation visit(OWLAnnotation node) {
  return df.getOWLAnnotation(t(node.getProperty()), t(node.getValue()),
          node.annotations().map(this::t));
}

private OWLAnnotation generateLabelAnnotation(String label) {
  OWLDataFactory df = mngr.getOWLDataFactory();
  OWLAnnotationProperty aProp = getPreferredLabel();
  String lang = getPreferredLanguage();
  OWLLiteral value = df.getOWLLiteral(label, lang);
  return df.getOWLAnnotation(aProp, value);
}

public void visit(OWLAnnotation node) {
  node.getProperty().accept(this);
  OWLAnnotationProperty prop = (OWLAnnotationProperty) obj;
  node.getValue().accept(this);
  OWLAnnotationValue val = (OWLAnnotationValue) obj;
  obj = dataFactory.getOWLAnnotation(prop, val);
}

public OWLAnnotation getAnnotation() {
  OWLAnnotationProperty property = annotationPropertySelector.getSelectedObject();
  if (property != null){
    lastSelectedProperty = property;
    OWLDataFactory dataFactory = owlEditorKit.getModelManager().getOWLDataFactory();
    OWLAnnotationValue obj = getSelectedEditor().getEditedObject();
    if (obj != null) {
      return dataFactory.getOWLAnnotation(property, obj);
    }
  }
  return null;
}

@Override
public Object visit(OWLAnnotation node) {
  return visit(node,
    () -> df.getOWLAnnotation(t(node.getProperty()), t(node.getValue()), t(node
      .annotations())));
}