public Color getChannelColor(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // Color is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getColor(); }
public String getChannelID(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // ID is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getID(); }
public IlluminationType getChannelIlluminationType(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // IlluminationType is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getIlluminationType(); }
public Length getChannelExcitationWavelength(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // ExcitationWavelength is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getExcitationWavelength(); }
public String getChannelName(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // Name is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getName(); }
public AcquisitionMode getChannelAcquisitionMode(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // AcquisitionMode is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getAcquisitionMode(); }
public Length getChannelEmissionWavelength(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // EmissionWavelength is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getEmissionWavelength(); }
public Double getChannelNDFilter(int imageIndex, int channelIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // NDFilter is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getNDFilter(); }
public int getLightPathAnnotationRefCount(int imageIndex, int channelIndex) { // Parents: {u'LightSource': {u'Instrument': {u'OME': None}}, u'Instrument': {u'OME': None}, u'Objective': {u'Instrument': {u'OME': None}}, u'Folder': {u'OME': None}, u'Detector': {u'Instrument': {u'OME': None}}, u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'Plate': {u'OME': None}, u'ExperimenterGroup': {u'OME': None}, u'Screen': {u'OME': None}, u'Reagent': {u'Screen': {u'OME': None}}, u'Plane': {u'Pixels': {u'Image': {u'OME': None}}}, u'Experimenter': {u'OME': None}, u'Annotation': None, u'Dichroic': {u'Instrument': {u'OME': None}}, u'Well': {u'Plate': {u'OME': None}}, u'Filter': {u'Instrument': {u'OME': None}}, u'PlateAcquisition': {u'Plate': {u'OME': None}}, u'ROI': {u'OME': None}, u'Project': {u'OME': None}, u'LightPath': {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}}, u'Image': {u'OME': None}, u'Dataset': {u'OME': None}, u'Shape': {u'Union': {u'ROI': {u'OME': None}}}} // AnnotationRef is a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().sizeOfLinkedAnnotationList(); }
public Double getDetectorSettingsGain(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // Gain is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getDetectorSettings().getGain(); }
public String getChannelLightSourceSettingsID(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // ID is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightSourceSettings().getID(); }
public Length getChannelLightSourceSettingsWavelength(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Wavelength is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightSourceSettings().getWavelength(); }
public Frequency getDetectorSettingsReadOutRate(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // ReadOutRate is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getDetectorSettings().getReadOutRate(); }
public PercentFraction getChannelLightSourceSettingsAttenuation(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Attenuation is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightSourceSettings().getAttenuation(); }
public int getLightPathExcitationFilterRefCount(int imageIndex, int channelIndex) { // Parents: {u'LightPath': {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}}, u'FilterSet': {u'Instrument': {u'OME': None}}} // ExcitationFilterRef is a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().sizeOfLinkedExcitationFilterList(); }
public String getChannelLightSourceSettingsID(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // ID is not a reference return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightSourceSettings().getID(); }
public String getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // EmissionFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedEmissionFilter(emissionFilterRefIndex).getID(); }
public String getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // ExcitationFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedExcitationFilter(excitationFilterRefIndex).getID(); }
public void setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), annotationLinks_reference); }
public void setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), annotationLinks_reference); }