/** * Creates and returns the root element. Creates an image w/o metadata. * * @return See above. */ public OME createImage() { ome.addImage(createImage(0)); return ome; }
/** * Creates and returns the root element. * * @param metadata Pass <code>true</code> to create an image with metadata, * <code>false</code> w/o/ * @return See above. */ public OME createImage(boolean metadata) { ome.addImage(createImage(0, metadata)); return ome; }
public void setImageName(String name, int imageIndex) { // Parents: {u'OME': None} // Name is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setName(name); }
public void setImageDescription(String description, int imageIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setDescription(description); }
public void setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex) { // Parents: {u'OME': None} // AcquisitionDate is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setAcquisitionDate(acquisitionDate); }
public void setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex) { // Parents: {u'OME': None} // AcquisitionDate is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setAcquisitionDate(acquisitionDate); }
public void setImageName(String name, int imageIndex) { // Parents: {u'OME': None} // Name is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setName(name); }
public void setImageDescription(String description, int imageIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setDescription(description); }
public void setImageID(String id, int imageIndex) { // Parents: {u'OME': None} // ID is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); model.addModelObject(id, o1); o1.setID(id); }
public BaseModelMock() { ome = new OME(); ome.addImage(makeImage(1)); }
public void setImageID(String id, int imageIndex) { // Parents: {u'OME': None} // ID is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); model.addModelObject(id, o1); o1.setID(id); }
/** Sets the Map value associated with this imaging environment */ public void setImagingEnvironmentMap(List<MapPair> map, int imageIndex) { OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setMap(map); }
/** Sets the Map value associated with this imaging environment */ public void setImagingEnvironmentMap(List<MapPair> map, int imageIndex) { OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setMap(map); }
public void setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // RefractiveIndex is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getObjectiveSettings() == null) { o1.setObjectiveSettings(new ObjectiveSettings()); } ObjectiveSettings o2 = o1.getObjectiveSettings(); o2.setRefractiveIndex(refractiveIndex); }
public void setPixelsPhysicalSizeZ(Length physicalSizeZ, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // PhysicalSizeZ is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getPixels() == null) { o1.setPixels(new Pixels()); } Pixels o2 = o1.getPixels(); o2.setPhysicalSizeZ(physicalSizeZ); }
public void setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // SignificantBits is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getPixels() == null) { o1.setPixels(new Pixels()); } Pixels o2 = o1.getPixels(); o2.setSignificantBits(significantBits); }
public void setPixelsPhysicalSizeX(Length physicalSizeX, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // PhysicalSizeX is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getPixels() == null) { o1.setPixels(new Pixels()); } Pixels o2 = o1.getPixels(); o2.setPhysicalSizeX(physicalSizeX); }
public void setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // SignificantBits is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getPixels() == null) { o1.setPixels(new Pixels()); } Pixels o2 = o1.getPixels(); o2.setSignificantBits(significantBits); }
public void setStageLabelZ(Length z, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // Z is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getStageLabel() == null) { o1.setStageLabel(new StageLabel()); } StageLabel o2 = o1.getStageLabel(); o2.setZ(z); }
public SPWModelMock(boolean makeLightSources) { ome = new OME(); annotations = new StructuredAnnotations(); ome.addInstrument(makeInstrument(makeLightSources)); for (int i = 0; i < WELL_ROWS.getValue() * WELL_COLS.getValue(); i++) { ome.addImage(makeImage(i)); } ome.addPlate(makePlate()); ome.setStructuredAnnotations(annotations); }