public void setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex) { // Parents: {u'OME': None} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getScreen(screenIndex), annotationLinks_reference); }
public void setInstrumentAnnotationRef(String annotation, int instrumentIndex, int annotationRefIndex) { // Parents: {u'OME': None} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getInstrument(instrumentIndex), annotationLinks_reference); }
public void setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex) { // Parents: {u'OME': None} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getROI(ROIIndex), annotationLinks_reference); }
public void setArcAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Arc)root.getInstrument(instrumentIndex).getLightSource(lightSourceIndex)), annotationLinks_reference); }
public void setFilterAnnotationRef(String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex) { // Parents: {u'Instrument': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getInstrument(instrumentIndex).getFilter(filterIndex), annotationLinks_reference); }
public void setGenericExcitationSourceAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((GenericExcitationSource)root.getInstrument(instrumentIndex).getLightSource(lightSourceIndex)), annotationLinks_reference); }
public void setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getListAnnotation(listAnnotationIndex), annotationLinks_reference); }
public void setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getLongAnnotation(longAnnotationIndex), annotationLinks_reference); }
public void setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex) { // Parents: {u'Plate': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getPlate(plateIndex).getWell(wellIndex), annotationLinks_reference); }
public void setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getXMLAnnotation(XMLAnnotationIndex), annotationLinks_reference); }
public void setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getDoubleAnnotation(doubleAnnotationIndex), annotationLinks_reference); }
public void setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getFileAnnotation(fileAnnotationIndex), annotationLinks_reference); }
public void setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex) { // Parents: {u'Screen': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getScreen(screenIndex).getReagent(reagentIndex), annotationLinks_reference); }
public void setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getTimestampAnnotation(timestampAnnotationIndex), annotationLinks_reference); }
public void setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex) { // Parents: {u'Plate': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getPlate(plateIndex).getWell(wellIndex), annotationLinks_reference); }
public void setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getXMLAnnotation(XMLAnnotationIndex), annotationLinks_reference); }
public void setPolygonAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Polygon)root.getROI(ROIIndex).getUnion().getShape(shapeIndex)), annotationLinks_reference); }
public void setMaskAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Mask)root.getROI(ROIIndex).getUnion().getShape(shapeIndex)), annotationLinks_reference); }
public void setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex), annotationLinks_reference); }
public void setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex) { // Parents: {u'Pixels': {u'Image': {u'OME': None}}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getImage(imageIndex).getPixels().getPlane(planeIndex), annotationLinks_reference); }