How to use

getImagePlus

method

in

net.imglib2.img.imageplus.ImagePlusImg

final ImagePlus outImp = ((ImagePlusImg<?,?>)outputSlice).getImagePlus();
final FileSaver fs = new FileSaver( outImp );
fs.saveAsTiff( new File( outputDirectory, "img_t" + lz( t, numTimePoints ) + "_z" + lz( slice+1, numSlices ) + "_c" + lz( c, numChannels ) ).getAbsolutePath() );

fusionImp[0] = ((ImagePlusImg<?, ?>) output).getImagePlus();
fusionImp[0].setTitle("fusing...");
fusionImp[0].show();

try 
  final ImagePlus outImp = ((ImagePlusImg<?,?>)out).getImagePlus();
  for ( int z = 1; z <= out.dimension( 2 ); ++z )
    stack.addSlice( imp.getTitle(), outImp.getStack().getProcessor( z ) );

fusionImp = ((ImagePlusImg<?, ?>) output).getImagePlus();
fusionImp.setTitle( "fusing..." );
fusionImp.show();

@SuppressWarnings("unchecked")
public static < T extends RealType< T > & NativeType< T > > ImagePlus getImagePlusInstance(
    final RandomAccessibleInterval< T > img,
    final boolean virtualDisplay,
    final String title,
    final double min,
    final double max )
{
  ImagePlus imp = null;
  if ( img instanceof ImagePlusImg )
    try { imp = ((ImagePlusImg<T, ?>)img).getImagePlus(); } catch (ImgLibException e) {}
  if ( imp == null )
  {
    if ( virtualDisplay )
      imp = ImageJFunctions.wrap( img, title, DeconViews.createExecutorService() );
    else
      imp = ImageJFunctions.wrap( img, title, DeconViews.createExecutorService() ).duplicate();
  }
  final double[] minmax = getFusionMinMax( img, min, max );
  imp.setTitle( title );
  imp.setDimensions( 1, (int)img.dimension( 2 ), 1 );
  imp.setDisplayRange( minmax[ 0 ], minmax[ 1 ] );
  return imp;
}

img.getImagePlus().show();

try
  impVis = img.getImagePlus();
  ipVis = ( ColorProcessor )impVis.getProcessor();
  while ( ipVis.getWidth() > meshResolution * minGridSize )

final ImagePlus outImp = ((ImagePlusImg<?, ?>)out).getImagePlus();
for ( int z = 1; z <= out.dimension( 2 ); ++z )
  stack.addSlice( "", outImp.getStack().getProcessor( z ) );

final ImagePlus outImp = ((ImagePlusImg<?,?>)out).getImagePlus();
for ( int z = 1; z <= out.dimension( 2 ); ++z )
  stack.addSlice( imp.getTitle(), outImp.getStack().getProcessor( z ) );