@Override public void setMetadataStore(MetadataStore store) { reader.setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { reader.setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { super.setMetadataStore(store); nativeReader.setMetadataStore(store); legacyReader.setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { super.setMetadataStore(store); nativeReader.setMetadataStore(store); legacyReader.setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { FormatTools.assertId(currentId, false, 2); for (int i=0; i<readers.length; i++) readers[i].setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { FormatTools.assertId(currentId, false, 2); for (int i=0; i<readers.length; i++) readers[i].setMetadataStore(store); }
@Override public void setMetadataStore(MetadataStore store) { FormatTools.assertId(getCurrentFile(), false, 2); reader.setMetadataStore(store); this.store = store; }
@Override public void setMetadataStore(MetadataStore store) { FormatTools.assertId(getCurrentFile(), false, 2); reader.setMetadataStore(store); this.store = store; }
@Parameters({"id"}) @BeforeClass public void parse(String id) throws Exception { ServiceFactory factory = new ServiceFactory(); service = factory.getInstance(OMEXMLService.class); metadata = service.createOMEXMLMetadata(); reader = new ImageReader(); reader.setMetadataStore(metadata); reader.setId(id); }
public static boolean createOMEXMLMetadata( final IFormatReader r ) { try { final ServiceFactory serviceFactory = new ServiceFactory(); final OMEXMLService service = serviceFactory.getInstance( OMEXMLService.class ); final IMetadata omexmlMeta = service.createOMEXMLMetadata(); r.setMetadataStore(omexmlMeta); } catch (final ServiceException e) { e.printStackTrace(); return false; } catch (final DependencyException e) { e.printStackTrace(); return false; } return true; }
public static boolean createOMEXMLMetadata( final IFormatReader r ) { try { final ServiceFactory serviceFactory = new ServiceFactory(); final OMEXMLService service = serviceFactory.getInstance( OMEXMLService.class ); final IMetadata omexmlMeta = service.createOMEXMLMetadata(); r.setMetadataStore(omexmlMeta); } catch (final ServiceException e) { e.printStackTrace(); return false; } catch (final DependencyException e) { e.printStackTrace(); return false; } return true; }
private IFormatReader getReader(String file, boolean omexml) throws FormatException, IOException { IFormatReader pnl = new DeltavisionReader(); if (checkSuffix(file, "tif")) { pnl = new MetamorphReader(); } if (omexml) { IMetadata metadata; try { metadata = service.createOMEXMLMetadata(); } catch (ServiceException exc) { throw new FormatException("Could not create OME-XML store.", exc); } pnl.setMetadataStore(metadata); } pnl.setId(file); return pnl; }
/** * Overridden to initialize the list. * * @see AbstractServerTest#setUp() */ @Override @BeforeClass protected void setUp() throws Exception { super.setUp(); upgrades = new HashMap<String, List<String>>(); downgrades = currentSchema(); windowsOS = (System.getProperty("os.name").toLowerCase().indexOf("windows") > -1); factory = new ServiceFactory(); service = factory.getInstance(OMEXMLService.class); metadata = service.createOMEXMLMetadata(); reader = new ImageReader(); reader.setMetadataStore(metadata); }
private IFormatReader getReader(String file, boolean omexml) throws FormatException, IOException { IFormatReader pnl = new DeltavisionReader(); if (checkSuffix(file, "tif")) { pnl = new MetamorphReader(); } if (omexml) { IMetadata metadata; try { metadata = service.createOMEXMLMetadata(); } catch (ServiceException exc) { throw new FormatException("Could not create OME-XML store.", exc); } pnl.setMetadataStore(metadata); } pnl.setId(file); return pnl; }
in.setMetadataStore(omeMeta); try { in.setId(file);
@Test public void testSetId() throws Exception { reader = new MinMaxCalculator(new ChannelSeparator( new ChannelFiller(new ImageReader()))); metadata = new OMEXMLMetadataImpl(); reader.setMetadataStore(metadata); reader.setId(temporaryFile.getAbsolutePath()); }
ServiceFactory factory = new ServiceFactory(); OMEXMLService service = factory.getInstance(OMEXMLService.class); reader.setMetadataStore(service.createOMEXMLMetadata());
@Test public void testSetId() throws Exception { reader = new MinMaxCalculator(new ChannelSeparator( new ChannelFiller(new ImageReader()))); metadata = new OMEXMLMetadataImpl(); reader.setMetadataStore(metadata); reader.setId(temporaryFile.getAbsolutePath()); }
@Test public void testSetIdWithNoLightSources() throws Exception { readerWithNoLightSources = new MinMaxCalculator(new ChannelSeparator( new ChannelFiller(new ImageReader()))); metadataWithNoLightSources = new OMEXMLMetadataImpl(); readerWithNoLightSources.setMetadataStore(metadataWithNoLightSources); readerWithNoLightSources.setId( temporaryFileWithNoLightSources.getAbsolutePath()); }
@Test public void testSetId() throws Exception { reader = new MinMaxCalculator(new ChannelSeparator( new ChannelFiller(new ImageReader()))); metadata = new OMEXMLMetadataImpl(); reader.setMetadataStore(metadata); reader.setId(temporaryFile.getAbsolutePath()); }