@Override public int getThumbSizeY() { return reader.getThumbSizeY(); }
@Override public int getThumbSizeY() { return reader.getThumbSizeY(); }
@Override public int getThumbSizeY() { return getReader().getThumbSizeY(); }
@Override public int getThumbSizeY() { return getReader().getThumbSizeY(); }
@Override public int getThumbSizeY() { FormatTools.assertId(getCurrentFile(), true, 2); return noStitch ? reader.getThumbSizeY() : getReader(getCoreIndex(), 0).getThumbSizeY(); }
@Override public int getThumbSizeY() { FormatTools.assertId(getCurrentFile(), true, 2); return noStitch ? reader.getThumbSizeY() : getReader(getCoreIndex(), 0).getThumbSizeY(); }
Modulo moduloT = reader.getModuloT(); int thumbSizeX = reader.getThumbSizeX(); int thumbSizeY = reader.getThumbSizeY(); int tileSizeX = reader.getOptimalTileWidth(); int tileSizeY = reader.getOptimalTileHeight();
if (planeSize < 0) { int width = reader.getThumbSizeX() * 4; int height = reader.getThumbSizeY() * 4; int x = (reader.getSizeX() - width) / 2; int y = (reader.getSizeY() - height) / 2; r.setVar("sizeY", reader.getSizeY()); r.setVar("thumbSizeX", reader.getThumbSizeX()); r.setVar("thumbSizeY", reader.getThumbSizeY()); r.setVar("little", reader.isLittleEndian());
if (planeSize < 0) { int width = reader.getThumbSizeX() * 4; int height = reader.getThumbSizeY() * 4; int x = (reader.getSizeX() - width) / 2; int y = (reader.getSizeY() - height) / 2; r.setVar("sizeY", reader.getSizeY()); r.setVar("thumbSizeX", reader.getThumbSizeX()); r.setVar("thumbSizeY", reader.getThumbSizeY()); r.setVar("little", reader.isLittleEndian());
public CoreMetadata(IFormatReader r, int coreIndex) { int currentIndex = r.getCoreIndex(); r.setCoreIndex(coreIndex); sizeX = r.getSizeX(); sizeY = r.getSizeY(); sizeZ = r.getSizeZ(); sizeC = r.getSizeC(); sizeT = r.getSizeT(); thumbSizeX = r.getThumbSizeX(); thumbSizeY = r.getThumbSizeY(); pixelType = r.getPixelType(); bitsPerPixel = r.getBitsPerPixel(); imageCount = r.getImageCount(); dimensionOrder = r.getDimensionOrder(); orderCertain = r.isOrderCertain(); rgb = r.isRGB(); littleEndian = r.isLittleEndian(); interleaved = r.isInterleaved(); indexed = r.isIndexed(); falseColor = r.isFalseColor(); metadataComplete = r.isMetadataComplete(); seriesMetadata = new Hashtable<String, Object>(); seriesMetadata.putAll(r.getSeriesMetadata()); thumbnail = r.isThumbnailSeries(); resolutionCount = r.getResolutionCount(); moduloZ = r.getModuloZ(); moduloC = r.getModuloC(); moduloT = r.getModuloT(); r.setCoreIndex(currentIndex); }
imgMeta.setThumbSizeY(reader.getThumbSizeY()); imgMeta.setPixelType(reader.getPixelType());
ms.imageCount = rr.getImageCount() * external.getFiles().length; ms.thumbSizeX = rr.getThumbSizeX(); ms.thumbSizeY = rr.getThumbSizeY(); ms.dimensionOrder = rr.getDimensionOrder();
ms.imageCount = rr.getImageCount() * external.getFiles().length; ms.thumbSizeX = rr.getThumbSizeX(); ms.thumbSizeY = rr.getThumbSizeY(); ms.dimensionOrder = rr.getDimensionOrder();
seriesTable.put(IS_RGB, String.valueOf(reader.isRGB())); seriesTable.put(THUMB_SIZE_X, String.valueOf(reader.getThumbSizeX())); seriesTable.put(THUMB_SIZE_Y, String.valueOf(reader.getThumbSizeY())); seriesTable.put(PIXEL_TYPE, FormatTools.getPixelTypeString(reader.getPixelType()));
public CoreMetadata(IFormatReader r, int coreIndex) { int currentIndex = r.getCoreIndex(); r.setCoreIndex(coreIndex); sizeX = r.getSizeX(); sizeY = r.getSizeY(); sizeZ = r.getSizeZ(); sizeC = r.getSizeC(); sizeT = r.getSizeT(); thumbSizeX = r.getThumbSizeX(); thumbSizeY = r.getThumbSizeY(); pixelType = r.getPixelType(); bitsPerPixel = r.getBitsPerPixel(); imageCount = r.getImageCount(); dimensionOrder = r.getDimensionOrder(); orderCertain = r.isOrderCertain(); rgb = r.isRGB(); littleEndian = r.isLittleEndian(); interleaved = r.isInterleaved(); indexed = r.isIndexed(); falseColor = r.isFalseColor(); metadataComplete = r.isMetadataComplete(); seriesMetadata = r.getSeriesMetadata(); thumbnail = r.isThumbnailSeries(); resolutionCount = r.getResolutionCount(); moduloZ = r.getModuloZ(); moduloC = r.getModuloC(); moduloT = r.getModuloT(); r.setCoreIndex(currentIndex); }