- <init>
Default constructor. Adds USE_ASYNC_IO to the Options if it is present in
Defaults.
- build
Validate and build the VariantContextWriter.
- setReferenceDictionary
Set the reference dictionary to be used by VariantContextWriters created by this
builder
- setOutputFile
Set the output file for the next VariantContextWriter created by this builder
Determines file type i
- setOption
Add one option to the set of Options for the VariantContextWriterBuilder, if
it's not already presen
- unsetOption
Remove one option from the set of Options for the VariantContextWriterBuilder,
if it's present
- setOptions
Replace the set of Options for the VariantContextWriterBuilder with a new set
- setOutputVCFStream
Set the output VCF stream for the next VariantContextWriter created by this
builder If buffered writ
- setOutputStream
Set the output stream (VCF, by default) for the next VariantContextWriter
created by this builder If
- clearOptions
Remove all options from the set of Options for the VariantContextWriterBuilder
- setOutputFileType
Set the output file type for the next VariantContextWriter created by this
builder
- setCreateMD5
Choose whether to also create an MD5 digest file for the next
VariantContextWriter created by this b