How to use

setDocId

method

in

de.julielab.jules.types.pubmed.Header

@Override
public void getNext(JCas jCas) throws IOException, CollectionException {
  DBObject doc = cur.next();
  Header h = new Header(jCas);
  h.setDocId(doc.get("_id").toString());
  h.addToIndexes();
  Map<String, Integer> dbDeleteKeys = new HashMap<String, Integer>();
  for (String deleteKeyName : keysToDelete) {
    if (doc.containsField(deleteKeyName))
      dbDeleteKeys.put(deleteKeyName, 1);
  }
  // insert all dbLists
  BasicDBObject updateQuery = new BasicDBObject("_id", doc.get("_id")
      .toString());
  BasicDBObject updateCommands = new BasicDBObject();
  updateCommands.put("$unset", dbDeleteKeys);
  coll.update(updateQuery, updateCommands, false, false);
}

static void getNext(JCas jcas, ResultSet res_, boolean expandAbbrevs_)
    throws CollectionException {
  try {
    int pmid = res_.getInt(1);
    String title = res_.getString(2);
    String abstrct = res_.getString(3);
    if (abstrct == null)
      abstrct = "";
    Header h = new Header(jcas);
    h.setDocId(pmid + "");
    h.setTitle(title);
    h.addToIndexes();
    if (expandAbbrevs_) {
      abstrct = AbbreviationExpander.expand(abstrct);
    }
    jcas.setDocumentText(abstrct);
  } catch (SQLException e) {
    throw new CollectionException(e);
  }
}

  jCas.setDocumentText("");
Header h = new Header(jCas);
h.setDocId(doc.get(ID).toString());
if (doc.containsField(TITLE) && doc.get(TITLE) != null)
  h.setTitle(doc.get(TITLE).toString());