How to use

BaleenAnnotator

in

uk.gov.dstl.baleen.uima

@Override
public void initialize(UimaContext context) throws ResourceInitializationException {
 // This will do initialization of resources,
 // but won't be included in the metrics
 super.initialize(context);
 String pipelineName = UimaUtils.getPipelineName(context);
 monitor = createMonitor(pipelineName);
 support = createSupport(pipelineName, context);
 monitor.startFunction("initialize");
 doInitialize(context);
 monitor.finishFunction("initialize");
 String uuid = (String) getContext().getConfigParameterValue(PipelineBuilder.ANNOTATOR_UUID);
 AnalysisEngineActionStore.getInstance().add(uuid, getAction());
}

/**
 * Add a new annotation, which is merged from the old annotations, removing the old annotations.
 *
 * @param newAnnotation The annotation which is to be added to the document as the merged result
 *     of the old annotations
 * @param annotations Annotation(s) which have been merged and should be removed
 */
protected void mergeWithNew(Annotation newAnnotation, Annotation... annotations) {
 getSupport().mergeWithNew(newAnnotation, annotations);
}

@Override
public void initialize(UimaContext context) throws ResourceInitializationException {
 super.initialize(context);
 processor = new CluProcessor(ConfigFactory.load("cluprocessoropen"));
}

@Override
public void doInitialize(final UimaContext aContext) throws ResourceInitializationException {
 super.doInitialize(aContext);
 if (typeNames == null || typeNames.length == 0) {
  structuralClasses = Sets.newHashSet(DEFAULT_STRUCTURAL_CLASSES);
 } else {
  structuralClasses = StructureUtil.getStructureClasses(typeNames);
 }
}

@Override
public void destroy() {
 monitor.startFunction("destroy");
 doDestroy();
 monitor.finishFunction("destroy");
}

@Override
public void process(JCas aJCas) throws AnalysisEngineProcessException {
 monitor.trace("Starting: " + getClass().getSimpleName());
 monitor.startFunction("process");
 doProcess(aJCas);
 monitor.finishFunction("process");
 monitor.persistCounts();
 monitor.trace("Finished: " + getClass().getSimpleName());
}

@Override
public void doInitialize(final UimaContext aContext) throws ResourceInitializationException {
 super.doInitialize(aContext);
 if (typeNames == null || typeNames.length == 0) {
  structuralClasses = Sets.newHashSet(DEFAULT_STRUCTURAL_CLASSES);
 } else {
  structuralClasses = StructureUtil.getStructureClasses(typeNames);
 }
}

@Override
public void destroy() {
 monitor.startFunction("destroy");
 doDestroy();
 monitor.finishFunction("destroy");
}

@Override
public void process(JCas aJCas) throws AnalysisEngineProcessException {
 monitor.trace("Starting: " + getClass().getSimpleName());
 monitor.startFunction("process");
 doProcess(aJCas);
 monitor.finishFunction("process");
 monitor.persistCounts();
 monitor.trace("Finished: " + getClass().getSimpleName());
}

@Override
public void initialize(UimaContext context) throws ResourceInitializationException {
 // This will do initialization of resources,
 // but won't be included in the metrics
 super.initialize(context);
 String pipelineName = UimaUtils.getPipelineName(context);
 monitor = createMonitor(pipelineName);
 support = createSupport(pipelineName, context);
 monitor.startFunction("initialize");
 doInitialize(context);
 monitor.finishFunction("initialize");
 String uuid = (String) getContext().getConfigParameterValue(PipelineBuilder.ANNOTATOR_UUID);
 AnalysisEngineActionStore.getInstance().add(uuid, getAction());
}

@Override
public void doInitialize(UimaContext aContext) throws ResourceInitializationException {
 super.doInitialize(aContext);
 try {
  classifierModel = new FileObject<cc.mallet.classify.Classifier>(modelPath).object();
 } catch (Exception e) {
  throw new ResourceInitializationException();
 }
}

/**
 * Merge an existing annotation with old annotations, removing the old annotations.
 *
 * @param existingAnnotation The annotation which exists and is to be left in the document
 *     (merged)
 * @param annotations Annotation(s) which have been merged wiht existingAnnotation and then
 *     removed
 */
protected void mergeWithExisting(Annotation existingAnnotation, Annotation... annotations) {
 getSupport().mergeWithExisting(existingAnnotation, annotations);
}

 @Override
 protected void doDestroy() {
  try {
   candidateSupplier.close();
  } catch (Exception e) {
   getMonitor().warn("Error closing resources", e);
  }
  super.doDestroy();
 }
}

@Override
public void initialize(UimaContext context) throws ResourceInitializationException {
 super.initialize(context);
 processor = new CluProcessor(ConfigFactory.load("cluprocessoropen"));
}

@Override
public void doInitialize(UimaContext aContext) throws ResourceInitializationException {
 super.doInitialize(aContext);
 try {
  classifierModel = new FileObject<cc.mallet.classify.Classifier>(modelPath).object();
 } catch (Exception e) {
  throw new ResourceInitializationException();
 }
}

/**
 * Add an annotation to the JCas index, notifying UimaMonitor of the fact we have done so
 *
 * @param annot Annotation(s) to add
 */
protected void addToJCasIndex(Collection<? extends Annotation> annotations) {
 getSupport().add(annotations);
}

 @Override
 protected void doDestroy() {
  try {
   candidateSupplier.close();
  } catch (Exception e) {
   getMonitor().warn("Error closing resources", e);
  }
  super.doDestroy();
 }
}

@Override
public void initialize(UimaContext context) throws ResourceInitializationException {
 super.initialize(context);
 String rules;
 try {
  rules = readFile();
  TaxonomyFactory taxonomyFactory = new TaxonomyFactory(includedTypeNames);
  OdinConfigurationProcessor ruleProcessor =
    new OdinConfigurationProcessor(taxonomyFactory.create(), rules);
  ee = ExtractorEngine.fromRules(ruleProcessor.process());
 } catch (UIMAException | IOException e) {
  throw new ResourceInitializationException(e);
 }
}

@Override
public void doInitialize(UimaContext aContext) throws ResourceInitializationException {
 super.doInitialize(aContext);
 try {
  model = ParallelTopicModel.read(new File(modelPath));
  pipe = new TopicModelPipe(stopwordResource.getStopwords(stoplist), model.getAlphabet());
  topicWords = new TopicWords(model);
 } catch (Exception e) {
  throw new ResourceInitializationException();
 }
}

/**
 * Add an annotation to the JCas index, notifying UimaMonitor of the fact we have done so
 *
 * @param annot Annotation(s) to add
 */
protected void addToJCasIndex(Annotation... annotations) {
 getSupport().add(annotations);
}