How to use

CgLibUtil

in

uk.ac.ebi.intact.persistence.util

public CvClass2Source( Class clazz, String parentNodeName ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = parentNodeName;
}

/**
 * From the real className of an object, gets a displayable name.
 *
 * @param obj the object for which we want the class name to display - the object must not be null
 *
 * @return the classname to display in the view.
 */
public static String getDisplayableClassName( Object obj ) {
  return getDisplayableClassName( getRealClassName( obj ) );
}

/**
 * From the real className of className, gets a displayable name.
 *
 * @param clazz the class for which we want the class name to display - the class must not be null
 *
 * @return the classname to display in the view.
 */
public static String getDisplayableClassName( Class clazz ) {
  return getDisplayableClassName( clazz.getName() );
}

public CvClass2Source( Class clazz, String parentNodeName ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = parentNodeName;
}

public CvClass2Source( Class clazz ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = null;
}

public CvClass2Source( Class clazz, String parentNodeName ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = parentNodeName;
}

public CvClass2Source( Class clazz ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = null;
}

public CvClass2Source( Class clazz ) {
  this.clazz = CgLibUtil.removeCglibEnhanced(clazz);
  this.parentNodeName = null;
}

  protected static String normalizeClassName(Class clazz) {
    Class realClass = CgLibUtil.removeCglibEnhanced(clazz);
    return realClass.getSimpleName();
    //return clazz.getSimpleName();
  }
}

/**
 * Gives the Object classname, give the real object class name if this is a VirtualProxy class
 *
 * @param obj the object for which we request the real class name.
 *
 * @return the real class name.
 */
public static <T> Class<T> getRealClassName( T obj ) {
  return removeCglibEnhanced( obj.getClass() );
}

public ReportedIntactObject(IntactObject intactObject) {
  this.ac = intactObject.getAc();
  this.objectClass = CgLibUtil.removeCglibEnhanced(intactObject.getClass());
}

public Cache cacheFor(Class<?> aoClass) {
  if (cacheMap.containsKey(aoClass)) {
    return cacheMap.get(aoClass);
  }
  String cacheName;
  if (Interactor.class.isAssignableFrom(aoClass)) {
    cacheName = Interactor.class.getName();
  } else if (CvObject.class.isAssignableFrom(aoClass)) {
    cacheName = CvObject.class.getName();
  } else {
    cacheName = CgLibUtil.removeCglibEnhanced(aoClass).getName();
  }
  Cache cache = cacheManager.getCache(cacheName);
  if (cache == null) {
    throw new RuntimeException("Cache not found: " + cacheName);
  }
  cacheMap.put(aoClass, cache);
  return cache;
}

/**
 * Gets the generic Xref type for an AnnotatedObject class
 * @param clazz an AnnotatedObject class
 * @return the Xref type used in the class
 */
public static Class<? extends Xref> getXrefClassType(Class<? extends AnnotatedObject> clazz)  {
  clazz = CgLibUtil.removeCglibEnhanced(clazz);
  
  PropertyDescriptor propDesc = null;
  try {
    propDesc = new PropertyDescriptor("xrefs", clazz);
  } catch (IntrospectionException e) {
    e.printStackTrace();
  }
  Method method = propDesc.getReadMethod();
  return getParameterizedType(method.getGenericReturnType());
}

/**
 * Gets the generic Xref type for an AnnotatedObject class
 * @param clazz an AnnotatedObject class
 * @return the Xref type used in the class
 *
 * @since 1.6.1
 */
public static Class<? extends Alias> getAliasClassType(Class<? extends AnnotatedObject> clazz)  {
  clazz = CgLibUtil.removeCglibEnhanced(clazz);
  PropertyDescriptor propDesc = null;
  try {
    propDesc = new PropertyDescriptor("aliases", clazz);
  } catch (IntrospectionException e) {
    e.printStackTrace();
  }
  Method method = propDesc.getReadMethod();
  return getParameterizedType(method.getGenericReturnType());
}

protected void writeCvTerm( Writer out, CvObject cv, String indent ) throws IOException {
  String title = cvtype2name.get( CgLibUtil.removeCglibEnhanced( cv.getClass() ) );
  if ( title == null ) {
    throw new IllegalStateException( "No title has been assigned to CV type: " + cv.getClass().getName() );
  }
  String sl = cv.getShortLabel();
  String fn = escapeXml( cv.getFullName() );
  writeField( out, title, sl, indent );
  // write fullname only if different from shortlabel and not null.
  if ( !sl.equals( fn ) ) {
    if ( fn != null && fn.length() > 0 ) {
      writeField( out, title, fn, indent );
    }
  }
  String mi = getMiReference( cv );
  if ( mi != null ) {
    writeField( out, title, mi, indent );
  }
}