How to use

ComponentConfidence

in

uk.ac.ebi.intact.model

protected ComponentConfidence cloneComponentConfidence(ComponentConfidence componentConfidence) throws IntactClonerException {
  if (componentConfidence == null) {
    throw new IllegalArgumentException("You must give a non null component confidence");
  }
  ComponentConfidence clone = new ComponentConfidence();
  clonerManager.addClone(componentConfidence, clone);
  clone.setValue(componentConfidence.getValue());
  clone.setComponent(clone(componentConfidence.getComponent()));
  clone.setCvConfidenceType(clone(componentConfidence.getCvConfidenceType()));
  return clone;
}

@Override
public boolean equals( Object o ) {
  return equals(o, false);
}

private Collection<ComponentConfidence> synchronizeComponentConfidences( Collection<ComponentConfidence> confidencesToSynchronize, Component parentComponent ) {
  List<ComponentConfidence> confidences = new ArrayList<ComponentConfidence>(confidencesToSynchronize.size());
  for ( ComponentConfidence confidence : confidencesToSynchronize ) {
    if (confidence.getAc() != null && IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentConfidenceDao().isTransient(confidence)) {
      confidence = IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentConfidenceDao().getByAc(confidence.getAc());
    }
    confidence.setCvConfidenceType( synchronize (confidence.getCvConfidenceType()));
    confidence.setComponent(parentComponent);
    confidences.add(confidence);
  }
  return confidences;
}

if (conf.getCvConfidenceType() != null && IntactConverterUtils.AUTHOR_SCORE_MI.equalsIgnoreCase(conf.getCvConfidenceType().getIdentifier())){
  Attribute authConf = new Attribute(IntactConverterUtils.AUTH_CONF_MI, IntactConverterUtils.AUTH_CONF, conf.getValue());

ComponentConfidence copyConfidence = ( ComponentConfidence ) confidence.clone();
copyConfidence.setComponent( copy );

@Override
public ComponentConfidence newConfidenceInstance(String value) {
  return new ComponentConfidence(value);
}

cvConfType.setOwner(confConverter.getInstitution());
cvConfType.setShortLabel(AUTHOR_SCORE);
confidence.setCvConfidenceType( cvConfType);

public void addConfidence( ComponentConfidence confidence ) {
  if ( !this.confidences.contains( confidence ) ) {
    this.confidences.add( confidence );
    confidence.setComponent( this);
  }
}

private Collection<ComponentConfidence> synchronizeComponentConfidences( Collection<ComponentConfidence> confidencesToSynchronize, Component parentComponent ) {
  List<ComponentConfidence> confidences = new ArrayList<ComponentConfidence>(confidencesToSynchronize.size());
  for ( ComponentConfidence confidence : confidencesToSynchronize ) {
    if (confidence.getAc() != null && IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentConfidenceDao().isTransient(confidence)) {
      confidence = IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentConfidenceDao().getByAc(confidence.getAc());
    }
    confidence.setCvConfidenceType( synchronize (confidence.getCvConfidenceType()));
    confidence.setComponent(parentComponent);
    confidences.add(confidence);
  }
  return confidences;
}

ComponentConfidence copyConfidence = ( ComponentConfidence ) confidence.clone();
copyConfidence.setComponent( copy );

public void addConfidence( ComponentConfidence confidence ) {
  if ( !this.confidences.contains( confidence ) ) {
    this.confidences.add( confidence );
    confidence.setComponent( this);
  }
}

protected ComponentConfidence cloneComponentConfidence(ComponentConfidence componentConfidence) throws IntactClonerException {
  if (componentConfidence == null) {
    throw new IllegalArgumentException("You must give a non null component confidence");
  }
  ComponentConfidence clone = new ComponentConfidence();
  clonerManager.addClone(componentConfidence, clone);
  clone.setValue(componentConfidence.getValue());
  clone.setComponent(clone(componentConfidence.getComponent()));
  clone.setCvConfidenceType(clone(componentConfidence.getCvConfidenceType()));
  return clone;
}

@Override
public boolean equals( Object o ) {
  return equals(o, false);
}