How to use
InteractionPersister$ExperimentWrapper
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.persister

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper (Showing top 9 results out of 315)

Common ways to obtain InteractionPersister$ExperimentWrapper

private void myMethod () {
 InteractionPersister$ExperimentWrapper i =Iterator iterator;(ExperimentWrapper) iterator.next()
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}

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );

Javadoc

Carries the result of the search for the non already existing interaction based on the data found in the PSI file. it contains: - a new shortlabel if the interaction doesn't exists. - the experiment to link to.

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How to useInteractionPersister$ExperimentWrapper in uk.ac.ebi.intact.application.dataConversion.psiUpload.persister

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper (Showing top 9 results out of 315)

How to use
InteractionPersister$ExperimentWrapper
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.persister