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InteractionPersister$ExperimentWrapper
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How to use
InteractionPersister$ExperimentWrapper
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.persister

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.persister.InteractionPersister$ExperimentWrapper (Showing top 9 results out of 315)

origin: uk.ac.ebi.intact.app/data-conversion

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;
origin: uk.ac.ebi.intact.util/data-conversion

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();
origin: uk.ac.ebi.intact.app/data-conversion

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();
origin: uk.ac.ebi.intact.util/data-conversion

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

for ( Iterator iterator2 = experiments.iterator(); iterator2.hasNext() && !found; ) {
  experimentWrapper = (ExperimentWrapper) iterator2.next();
  if ( experimentWrapper.getExperiment().equals( psiExperiment ) ) {
    found = true;
origin: uk.ac.ebi.intact.util/data-conversion

for ( Iterator iterator = e.iterator(); iterator.hasNext(); ) {
  ExperimentDescriptionTag experimentDescription = (ExperimentDescriptionTag) iterator.next();
  experiments.add( new ExperimentWrapper( experimentDescription ) );
  ExperimentWrapper experimentWrapper = (ExperimentWrapper) iterator.next();
  ExperimentDescriptionTag psiExperiment = experimentWrapper.getExperiment();
  Experiment intactExperiment = ExperimentDescriptionPersister.persist( psiExperiment );
  myExperiments.add( intactExperiment );
  final String shortlabel = experimentWrapper.getShortlabel();
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );
origin: uk.ac.ebi.intact.app/data-conversion

if ( !experimentWrapper.hasShortlabel() ) {
  atLeastOneInteractionWithoutShortlabel = true; // exit the loop.
  if ( DEBUG ) {
if ( !experimentWrapper.hasShortlabel() ) {
  experimentWrapper.setShortlabel( label );
  oneExperimentHasAlreadyBeenUpdated = true;
  if ( DEBUG ) {
    System.out.println( "Experiment " + experimentWrapper.getExperiment().getShortlabel()
              + " has been given the interaction shortlabel: " + label );
uk.ac.ebi.intact.application.dataConversion.psiUpload.persisterInteractionPersister$ExperimentWrapper

Javadoc

Carries the result of the search for the non already existing interaction based on the data found in the PSI file. it contains: - a new shortlabel if the interaction doesn't exists. - the experiment to link to.

Most used methods

  • <init>
  • getExperiment
  • getShortlabel
  • hasShortlabel
  • setShortlabel

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