if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
public int hashCode() { int result; result = secondaryXrefs.hashCode(); result = 29 * result + ( organism != null ? organism.hashCode() : 0 ); result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 ); result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 ); result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 ); result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 ); result = 29 * result + aliases.hashCode(); return result; }
taxid = proteinInteractor.getOrganism().getTaxId();
organismTag = new OrganismTag( taxid, cellType, tissue ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
taxid = proteinInteractor.getOrganism().getTaxId();
organismTag = new OrganismTag( taxid, cellType, tissue ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
public static void check( final OrganismTag organism, final BioSourceFactory bioSourceFactory ) { final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); check( taxid, cellType, tissue, bioSourceFactory ); } }
taxid = proteinInteractor.getOrganism().getTaxId();
organismTag = new OrganismTag( taxid, cellType, tissue ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
public int hashCode() { int result; result = secondaryXrefs.hashCode(); result = 29 * result + ( organism != null ? organism.hashCode() : 0 ); result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 ); result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 ); result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 ); result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 ); result = 29 * result + aliases.hashCode(); return result; }
if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
taxid = proteinInteractor.getOrganism().getTaxId(); } else { taxid = "taxid not specified";
hostOrganism = new OrganismTag( defaultTaxid );
public int hashCode() { int result; result = secondaryXrefs.hashCode(); result = 29 * result + ( organism != null ? organism.hashCode() : 0 ); result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 ); result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 ); result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 ); result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 ); result = 29 * result + aliases.hashCode(); return result; }
if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )
public static BioSource getBioSource( final OrganismTag organism ) { if ( organism == null ) { return null; } final String taxid = organism.getTaxId(); final CellTypeTag cellType = organism.getCellType(); final TissueTag tissue = organism.getTissue(); return getBioSource( taxid, cellType, tissue ); }
taxid = proteinInteractor.getOrganism().getTaxId(); } else { taxid = "taxid not specified";
hostOrganism = new OrganismTag( defaultTaxid );