How to use

OrganismTag

in

uk.ac.ebi.intact.application.dataConversion.psiUpload.model

if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

public int hashCode() {
  int result;
  result = secondaryXrefs.hashCode();
  result = 29 * result + ( organism != null ? organism.hashCode() : 0 );
  result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 );
  result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 );
  result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 );
  result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 );
  result = 29 * result + aliases.hashCode();
  return result;
}

taxid = proteinInteractor.getOrganism().getTaxId();

  organismTag = new OrganismTag( taxid, cellType, tissue );
} catch ( IllegalArgumentException e ) {
  MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );

taxid = proteinInteractor.getOrganism().getTaxId();

  organismTag = new OrganismTag( taxid, cellType, tissue );
} catch ( IllegalArgumentException e ) {
  MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );

  public static void check( final OrganismTag organism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = organism.getTaxId();
    final CellTypeTag cellType = organism.getCellType();
    final TissueTag tissue = organism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

taxid = proteinInteractor.getOrganism().getTaxId();

  organismTag = new OrganismTag( taxid, cellType, tissue );
} catch ( IllegalArgumentException e ) {
  MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );

public int hashCode() {
  int result;
  result = secondaryXrefs.hashCode();
  result = 29 * result + ( organism != null ? organism.hashCode() : 0 );
  result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 );
  result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 );
  result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 );
  result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 );
  result = 29 * result + aliases.hashCode();
  return result;
}

if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

  taxid = proteinInteractor.getOrganism().getTaxId();
} else {
  taxid = "taxid not specified";

hostOrganism = new OrganismTag( defaultTaxid );

public int hashCode() {
  int result;
  result = secondaryXrefs.hashCode();
  result = 29 * result + ( organism != null ? organism.hashCode() : 0 );
  result = 29 * result + ( shortlabel != null ? shortlabel.hashCode() : 0 );
  result = 29 * result + ( fullname != null ? fullname.hashCode() : 0 );
  result = 29 * result + ( primaryXref != null ? primaryXref.hashCode() : 0 );
  result = 29 * result + ( sequence != null ? sequence.hashCode() : 0 );
  result = 29 * result + aliases.hashCode();
  return result;
}

if ( organism != null ? !organism.equals( proteinInteractorTag.organism ) : proteinInteractorTag.organism != null )

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

  taxid = proteinInteractor.getOrganism().getTaxId();
} else {
  taxid = "taxid not specified";

hostOrganism = new OrganismTag( defaultTaxid );