uk.ac.ebi.intact.application.dataConversion.psiUpload.model.ExpressedInTag java code examples

Common ways to obtain ExpressedInTag

private void myMethod () {
 ExpressedInTag e =Conversion.psiUpload.model.ProteinParticipantTag proteinParticipantTag;proteinParticipantTag.getExpressedIn()
Iterator iterator;(ExpressedInTag) iterator.next()
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}

public boolean equals( Object o ) {
  if ( this == o ) {
    return true;
  }
  if ( !( o instanceof ProteinParticipantTag ) ) {
    return false;
  }
  final ProteinParticipantTag proteinParticipantTag = (ProteinParticipantTag) o;
  if ( expressedIn != null ? !expressedIn.equals( proteinParticipantTag.expressedIn ) : proteinParticipantTag.expressedIn != null ) {
    return false;
  }
  if ( features != null ? !features.equals( proteinParticipantTag.features ) : proteinParticipantTag.features != null ) {
    return false;
  }
  if ( isOverExpressedProtein != null ? !isOverExpressedProtein.equals( proteinParticipantTag.isOverExpressedProtein ) : proteinParticipantTag.isOverExpressedProtein != null ) {
    return false;
  }
  if ( isTaggedProtein != null ? !isTaggedProtein.equals( proteinParticipantTag.isTaggedProtein ) : proteinParticipantTag.isTaggedProtein != null ) {
    return false;
  }
  if ( !proteinInteractor.equals( proteinParticipantTag.proteinInteractor ) ) {
    return false;
  }
  if ( !role.equals( proteinParticipantTag.role ) ) {
    return false;
  }
  return true;
}

public int hashCode() {
  int result;
  result = proteinInteractor.hashCode();
  result = 29 * result + role.hashCode();
  result = 29 * result + ( expressedIn != null ? expressedIn.hashCode() : 0 );
  result = 29 * result + ( features != null ? features.hashCode() : 0 );
  result = 29 * result + ( isTaggedProtein != null ? isTaggedProtein.hashCode() : 0 );
  result = 29 * result + ( isOverExpressedProtein != null ? isOverExpressedProtein.hashCode() : 0 );
  return result;
}

      expressedInAnnotations.add( new ExpressedInTag( annotation ) );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
for ( Iterator iterator = expressedInAnnotations.iterator(); iterator.hasNext() && null == expressedIn; ) {
  ExpressedInTag tmp = (ExpressedInTag) iterator.next();
  if ( tmp.getProteinInteractorID().equals( id ) ) {
    expressedIn = tmp;

  throw new IllegalArgumentException( "Could not check ExpressedInTag if the given parameter is null" );
String shortlabel = expressedIn.getBioSourceShortlabel();

      expressedInAnnotations.add( new ExpressedInTag( annotation ) );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
for ( Iterator iterator = expressedInAnnotations.iterator(); iterator.hasNext() && null == expressedIn; ) {
  ExpressedInTag tmp = (ExpressedInTag) iterator.next();
  if ( tmp.getProteinInteractorID().equals( id ) ) {
    expressedIn = tmp;

  throw new IllegalArgumentException( "Could not check ExpressedInTag if the given parameter is null" );
String shortlabel = expressedIn.getBioSourceShortlabel();

      expressedInAnnotations.add( new ExpressedInTag( annotation ) );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
for ( Iterator iterator = expressedInAnnotations.iterator(); iterator.hasNext() && null == expressedIn; ) {
  ExpressedInTag tmp = (ExpressedInTag) iterator.next();
  if ( tmp.getProteinInteractorID().equals( id ) ) {
    expressedIn = tmp;

  throw new IllegalArgumentException( "Could not check ExpressedInTag if the given parameter is null" );
String shortlabel = expressedIn.getBioSourceShortlabel();

public int hashCode() {
  int result;
  result = proteinInteractor.hashCode();
  result = 29 * result + role.hashCode();
  result = 29 * result + ( expressedIn != null ? expressedIn.hashCode() : 0 );
  result = 29 * result + ( features != null ? features.hashCode() : 0 );
  result = 29 * result + ( isTaggedProtein != null ? isTaggedProtein.hashCode() : 0 );
  result = 29 * result + ( isOverExpressedProtein != null ? isOverExpressedProtein.hashCode() : 0 );
  return result;
}

public boolean equals( Object o ) {
  if ( this == o ) {
    return true;
  }
  if ( !( o instanceof ProteinParticipantTag ) ) {
    return false;
  }
  final ProteinParticipantTag proteinParticipantTag = (ProteinParticipantTag) o;
  if ( expressedIn != null ? !expressedIn.equals( proteinParticipantTag.expressedIn ) : proteinParticipantTag.expressedIn != null ) {
    return false;
  }
  if ( features != null ? !features.equals( proteinParticipantTag.features ) : proteinParticipantTag.features != null ) {
    return false;
  }
  if ( isOverExpressedProtein != null ? !isOverExpressedProtein.equals( proteinParticipantTag.isOverExpressedProtein ) : proteinParticipantTag.isOverExpressedProtein != null ) {
    return false;
  }
  if ( isTaggedProtein != null ? !isTaggedProtein.equals( proteinParticipantTag.isTaggedProtein ) : proteinParticipantTag.isTaggedProtein != null ) {
    return false;
  }
  if ( !proteinInteractor.equals( proteinParticipantTag.proteinInteractor ) ) {
    return false;
  }
  if ( !role.equals( proteinParticipantTag.role ) ) {
    return false;
  }
  return true;
}

BioSource bs = ExpressedInChecker.getBioSource( expressedIn.getBioSourceShortlabel() );
component.setExpressedIn( bs );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentDao().update( component );

public int hashCode() {
  int result;
  result = proteinInteractor.hashCode();
  result = 29 * result + role.hashCode();
  result = 29 * result + ( expressedIn != null ? expressedIn.hashCode() : 0 );
  result = 29 * result + ( features != null ? features.hashCode() : 0 );
  result = 29 * result + ( isTaggedProtein != null ? isTaggedProtein.hashCode() : 0 );
  result = 29 * result + ( isOverExpressedProtein != null ? isOverExpressedProtein.hashCode() : 0 );
  return result;
}

public boolean equals( Object o ) {
  if ( this == o ) {
    return true;
  }
  if ( !( o instanceof ProteinParticipantTag ) ) {
    return false;
  }
  final ProteinParticipantTag proteinParticipantTag = (ProteinParticipantTag) o;
  if ( expressedIn != null ? !expressedIn.equals( proteinParticipantTag.expressedIn ) : proteinParticipantTag.expressedIn != null ) {
    return false;
  }
  if ( features != null ? !features.equals( proteinParticipantTag.features ) : proteinParticipantTag.features != null ) {
    return false;
  }
  if ( isOverExpressedProtein != null ? !isOverExpressedProtein.equals( proteinParticipantTag.isOverExpressedProtein ) : proteinParticipantTag.isOverExpressedProtein != null ) {
    return false;
  }
  if ( isTaggedProtein != null ? !isTaggedProtein.equals( proteinParticipantTag.isTaggedProtein ) : proteinParticipantTag.isTaggedProtein != null ) {
    return false;
  }
  if ( !proteinInteractor.equals( proteinParticipantTag.proteinInteractor ) ) {
    return false;
  }
  if ( !role.equals( proteinParticipantTag.role ) ) {
    return false;
  }
  return true;
}

BioSource bs = ExpressedInChecker.getBioSource( expressedIn.getBioSourceShortlabel() );
component.setExpressedIn( bs );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentDao().update( component );

BioSource bs = ExpressedInChecker.getBioSource( expressedIn.getBioSourceShortlabel() );
component.setExpressedIn( bs );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getComponentDao().update( component );

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How to useExpressedInTag in uk.ac.ebi.intact.application.dataConversion.psiUpload.model

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.model.ExpressedInTag (Showing top 15 results out of 315)

How to use
ExpressedInTag
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.model