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Component2xmlPSI25
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How to use
Component2xmlPSI25
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Component2xmlPSI25 (Showing top 15 results out of 315)

origin: uk.ac.ebi.intact.app/data-conversion

createParticipant( session, parent, component );
origin: uk.ac.ebi.intact.util/data-conversion

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}
origin: uk.ac.ebi.intact.app/data-conversion

element.setAttribute( "id", getParticipantId( session, component ) );
origin: uk.ac.ebi.intact.util/data-conversion

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}
origin: uk.ac.ebi.intact.util/data-conversion

element.setAttribute( "id", getParticipantId( session, component ) );
origin: uk.ac.ebi.intact.app/data-conversion

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
origin: uk.ac.ebi.intact.app/data-conversion

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}
origin: uk.ac.ebi.intact.util/data-conversion

createParticipant( session, parent, component );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

element.setAttribute( "id", getParticipantId( session, component ) );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

createParticipant( session, parent, component );
origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

if( isTaggedFeature( feature.getCvFeatureType() ) ) {
origin: uk.ac.ebi.intact.util/data-conversion

if( isTaggedFeature( feature.getCvFeatureType() ) ) {
origin: uk.ac.ebi.intact.app/data-conversion

if( isTaggedFeature( feature.getCvFeatureType() ) ) {
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25Component2xmlPSI25

Javadoc

Implements the tranformation of an IntAct Component into PSI XML.

Most used methods

  • createParticipant
    Generate the XMl content of a participant as well as the experimentalForm based on the given compone
  • getInstance
  • getParticipantId
    get the value what will be used as ID of the experiment.
  • isTaggedFeature
    Check that the given feature type is a tag. By definition a Feature is a Tag is its CvFeatureType is

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