How to use
Experiment2xmlPSI2
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Experiment2xmlPSI2 (Showing top 9 results out of 315)

} else {
  ckeckExperimentParentName( parent );
element.setAttribute( "ref", getExperimentId( session, experiment ) );

element.setAttribute( "id", getExperimentId( session, experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

element.setAttribute( "id", getExperimentId( session, experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

element.setAttribute( "id", getExperimentId( session, experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

} else {
  ckeckExperimentParentName( parent );
element.setAttribute( "ref", getExperimentId( session, experiment ) );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

} else {
  ckeckExperimentParentName( parent );
element.setAttribute( "ref", getExperimentId( session, experiment ) );

Javadoc

Process the common behaviour of an IntAct Experiment when exporting PSI version 2.

Most used methods

ckeckExperimentParentName
createAttributeList
createBibRef
generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubme
createConfidence
createExperimentXrefs
Generate and add to the given element the Xrefs of the experiment (but no pubmed). The given set of
createNames
getExperimentId
get the value what will be used as ID of the experiment.
getInstance

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How to useExperiment2xmlPSI2 in uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Experiment2xmlPSI2 (Showing top 9 results out of 315)

How to use
Experiment2xmlPSI2
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2