How to use

Component2xmlPSI2

in

uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2

element = createProteinExperimentalForm( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

element = createProteinParticipant( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
  return true;

proteinParticipantRef.setAttribute( "ref", getParticipantId( session, component ) );
proteinExperimentalFormElement.appendChild( proteinParticipantRef );
boolean isTagged = isTaggedFeature( feature.getCvFeatureType() );
Element isTaggedElement = session.createElement( "isTagged" );
Text isTaggedText = session.createTextNode( ( isTagged ? "true" : "false" ) );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

c2psi.createExperimentalForm( session, experimentalFormListElement, component );

proteinParticipantRef.setAttribute( "ref", getParticipantId( session, component ) );
proteinExperimentalFormElement.appendChild( proteinParticipantRef );
boolean isTagged = isTaggedFeature( feature.getCvFeatureType() );
Element isTaggedElement = session.createElement( "isTagged" );
Text isTaggedText = session.createTextNode( ( isTagged ? "true" : "false" ) );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

c2psi.createExperimentalForm( session, experimentalFormListElement, component );

proteinParticipantRef.setAttribute( "ref", getParticipantId( session, component ) );
proteinExperimentalFormElement.appendChild( proteinParticipantRef );
boolean isTagged = isTaggedFeature( feature.getCvFeatureType() );
Element isTaggedElement = session.createElement( "isTagged" );
Text isTaggedText = session.createTextNode( ( isTagged ? "true" : "false" ) );

element = createProteinExperimentalForm( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

element = createProteinParticipant( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Component2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Component2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Component2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Component2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
  return true;

c2psi.createExperimentalForm( session, experimentalFormListElement, component );

element.setAttribute( "id", getParticipantId( session, component ) );
      isTagged = isTaggedFeature( feature.getCvFeatureType() );

element = createProteinExperimentalForm( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

element = createProteinParticipant( session, parent, component );
element = createSmallMoleculeParticipant( session, parent, component );

CvFeatureType parent = (CvFeatureType) iterator.next();
if ( isTaggedFeature( parent ) ) {
  return true;

element.setAttribute( "id", getParticipantId( session, component ) );
      isTagged = isTaggedFeature( feature.getCvFeatureType() );