/** * Generate an filled attributeList based upon the annotation of the given AnnotatedObject. * * @param session * @param parent the Element to which we will attach the newly generated AttributeList. * @param object the Annotated object from which we generate the attributes. * * @return a newly created attributeList or null if none were created. */ protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) { return createAttributeList( session, parent, object, null ); }
Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );
Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );
Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );
/** * Generate an filled attributeList based upon the annotation of the given AnnotatedObject. * * @param session * @param parent the Element to which we will attach the newly generated AttributeList. * @param object the Annotated object from which we generate the attributes. * * @return a newly created attributeList or null if none were created. */ protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) { return createAttributeList( session, parent, object, null ); }
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );
/** * Generate an filled attributeList based upon the annotation of the given AnnotatedObject. * * @param session * @param parent the Element to which we will attach the newly generated AttributeList. * @param object the Annotated object from which we generate the attributes. * * @return a newly created attributeList or null if none were created. */ protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) { return createAttributeList( session, parent, object, null ); }
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );
Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY ); identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );
Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );
Collection pubmedXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( experiment, CvDatabase.PUBMED );
Collection psiXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( cvObject, CvDatabase.PSI_MI );