How to use

AbstractAnnotatedObject2xml

in

uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator

/**
 * Generate an filled attributeList based upon the annotation of the given AnnotatedObject.
 *
 * @param session
 * @param parent  the Element to which we will attach the newly generated AttributeList.
 * @param object  the Annotated object from which we generate the attributes.
 *
 * @return a newly created attributeList or null if none were created.
 */
protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  return createAttributeList( session, parent, object, null );
}

Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );

Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );

Collection interproXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( feature, CvDatabase.INTERPRO );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );

/**
 * Generate an filled attributeList based upon the annotation of the given AnnotatedObject.
 *
 * @param session
 * @param parent  the Element to which we will attach the newly generated AttributeList.
 * @param object  the Annotated object from which we generate the attributes.
 *
 * @return a newly created attributeList or null if none were created.
 */
protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  return createAttributeList( session, parent, object, null );
}

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( interactor, CvXrefQualifier.PRIMARY_REFERENCE );

/**
 * Generate an filled attributeList based upon the annotation of the given AnnotatedObject.
 *
 * @param session
 * @param parent  the Element to which we will attach the newly generated AttributeList.
 * @param object  the Annotated object from which we generate the attributes.
 *
 * @return a newly created attributeList or null if none were created.
 */
protected Element createAttributeList( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  return createAttributeList( session, parent, object, null );
}

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );

Collection identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.IDENTITY );
  identityXrefs = AbstractAnnotatedObject2xml.getXrefByQualifier( protein, CvXrefQualifier.PRIMARY_REFERENCE );

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( protein, CvDatabase.UNIPROT );

Collection uniprotXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( smallMolecule, CvDatabase.RESID );

Collection pubmedXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( experiment, CvDatabase.PUBMED );

Collection psiXrefs = AbstractAnnotatedObject2xml.getXrefByDatabase( cvObject, CvDatabase.PSI_MI );