How to use

CvMapping

in

uk.ac.ebi.intact.application.dataConversion.psiDownload

  public static void main( String[] args ) throws IntactException {

    CvMapping mapping = new CvMapping();

    try
    {
      log.debug( "Database: " + IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getBaseDao().getDbName() );
      long start = System.currentTimeMillis();
      mapping.loadFile( new File( args[ 0 ] ));
      long stop = System.currentTimeMillis();

      log.debug( "Loading time: " + ( stop - start ) + "ms" );
    }
    catch (SQLException e)
    {
      e.printStackTrace();
    }

  }
}

CvObject to = (CvObject) ois.readObject();
addMapping( aMap, from, to );

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String fromCls = getSimpleName( from.getClass() );
  String toCls = getSimpleName( to.getClass() );
  String msg = fromCls + "->" + toCls;
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );

Map loadedMap = loadSerializedMap( serializedFile );
              CvObject _fromCvObject = (CvObject) iterator.next();
              addMapping( map, _fromCvObject, toCvObject );
              CvObject _toCvObject = (CvObject) iterator.next();
              addMapping( map, fromCvObject, _toCvObject );
            addMapping( map, fromCvObject, toCvObject );
serializeMapping( map, serializedFile );

cvMapping = new CvMapping();

CvObject toCvObject = session.getReverseCvMapping().getPSI2toPSI1( cv );
if ( toCvObject != null && ! toCvObject.equals( cv ) ) {
  String msg = "NOTE: '" + cv.getShortLabel() + "' remapped to '" + toCvObject.getShortLabel() + "'.";

Map loadedMap = loadSerializedMap( serializedFile );
              CvObject _fromCvObject = (CvObject) iterator.next();
              addMapping( map, _fromCvObject, toCvObject );
              CvObject _toCvObject = (CvObject) iterator.next();
              addMapping( map, fromCvObject, _toCvObject );
            addMapping( map, fromCvObject, toCvObject );
serializeMapping( map, serializedFile );

cvMapping = new CvMapping();

CvObject toCvObject = session.getReverseCvMapping().getPSI2toPSI1( cv );
if ( toCvObject != null && ! toCvObject.equals( cv ) ) {
  String msg = "NOTE: '" + cv.getShortLabel() + "' remapped to '" + toCvObject.getShortLabel() + "'.";

Map loadedMap = loadSerializedMap( serializedFile );
              CvObject _fromCvObject = (CvObject) iterator.next();
              addMapping( map, _fromCvObject, toCvObject );
              CvObject _toCvObject = (CvObject) iterator.next();
              addMapping( map, fromCvObject, _toCvObject );
            addMapping( map, fromCvObject, toCvObject );
serializeMapping( map, serializedFile );

  public static void main( String[] args ) throws IntactException {

    CvMapping mapping = new CvMapping();

    try
    {
      log.debug( "Database: " + IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getBaseDao().getDbName() );
      long start = System.currentTimeMillis();
      mapping.loadFile( new File( args[ 0 ] ));
      long stop = System.currentTimeMillis();

      log.debug( "Loading time: " + ( stop - start ) + "ms" );
    }
    catch (SQLException e)
    {
      e.printStackTrace();
    }

  }
}

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String fromCls = getSimpleName( from.getClass() );
  String toCls = getSimpleName( to.getClass() );
  String msg = fromCls + "->" + toCls;
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );

CvObject to = (CvObject) ois.readObject();
addMapping( aMap, from, to );

cvMapping = new CvMapping();

CvObject toCvObject = session.getReverseCvMapping().getPSI2toPSI1( cv );
if ( toCvObject != null && ! toCvObject.equals( cv ) ) {
  String msg = "NOTE: '" + cv.getShortLabel() + "' remapped to '" + toCvObject.getShortLabel() + "'.";

  public static void main( String[] args ) throws IntactException {

    CvMapping mapping = new CvMapping();

    try
    {
      log.debug( "Database: " + IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getBaseDao().getDbName() );
      long start = System.currentTimeMillis();
      mapping.loadFile( new File( args[ 0 ] ));
      long stop = System.currentTimeMillis();

      log.debug( "Loading time: " + ( stop - start ) + "ms" );
    }
    catch (SQLException e)
    {
      e.printStackTrace();
    }

  }
}

String mapping = getPsiReference( from ) + " --> " + getPsiReference( to );
  String fromCls = getSimpleName( from.getClass() );
  String toCls = getSimpleName( to.getClass() );
  String msg = fromCls + "->" + toCls;
  String existing = getPsiReference( from ) + " --> " + getPsiReference( (CvObject) map.get( from ) );
  System.err.println( "WARNING: mapping " + mapping + " is conflicting with " + existing );
  System.err.println( "Skip it." );

CvObject to = (CvObject) ois.readObject();
addMapping( aMap, from, to );

mapping = new CvMapping();
mapping.loadFile(reverseCvFilename);

mapping = new CvMapping();
mapping.loadFile(reverseCvFilename);