Options options = setupCommandLineOptions(); displayUsage( options ); displayUsage( options ); System.exit( 0 ); generatePsiData( searchPattern, fileName, chunkSize, psiVersion, cvMapping );
Collection searchResults = getExperiments( searchPattern ); System.out.println( "processing large experiment " + exp.getShortLabel() + " ...." ); FileGenerator.processLargeExperiment( exp, fileName, chunkSize, version, mapping ); Document psiDoc = generateData( searchResults, session ); session.printMessageReport( System.err ); write( psiDoc.getDocumentElement(), new File( fileName ) );
/*interactions = */filterInteractions(interactions);
write( session.getPsiDocument().getDocumentElement(), new File( mainFileName ) ); System.out.println();
/*interactions = */filterInteractions(interactions);
write( session.getPsiDocument().getDocumentElement(), new File( mainFileName ) ); System.out.println();
Collection searchResults = getExperiments( searchPattern ); System.out.println( "processing large experiment " + exp.getShortLabel() + " ...." ); FileGenerator.processLargeExperiment( exp, fileName, chunkSize, version, mapping ); Document psiDoc = generateData( searchResults, session ); session.printMessageReport( System.err ); write( psiDoc.getDocumentElement(), new File( fileName ) );
Options options = setupCommandLineOptions(); displayUsage( options ); displayUsage( options ); System.exit( 0 ); generatePsiData( searchPattern, fileName, chunkSize, psiVersion, cvMapping );
/*interactions = */filterInteractions(interactions);
write( session.getPsiDocument().getDocumentElement(), new File( mainFileName ) ); System.out.println();
Collection searchResults = getExperiments( searchPattern ); System.out.println( "processing large experiment " + exp.getShortLabel() + " ...." ); FileGenerator.processLargeExperiment( exp, fileName, chunkSize, version, mapping ); Document psiDoc = generateData( searchResults, session ); session.printMessageReport( System.err ); write( psiDoc.getDocumentElement(), new File( fileName ) );
Options options = setupCommandLineOptions(); displayUsage( options ); displayUsage( options ); System.exit( 0 ); generatePsiData( searchPattern, fileName, chunkSize, psiVersion, cvMapping );